Table 2 Summary of differential abundance at phylum and genus level between distal intestine digesta and swim bladder in rainbow trout.

From: In-depth analysis of swim bladder-associated microbiota in rainbow trout (Oncorhynchus mykiss)

Phylum

Genus

Log 2 fold differencea

P adjustedb

Firmicutes

 

3.5035

<0.001

Cohnella

4.2391

<0.001

Lactococcus

2.1907

0.017

Bacteroidetes

 

1.8064

0.003

Tenericutes

 

6.386

<0.001

Mycoplasma

4.0288

<0.001

Actinobacteria

 

Clavibacter

−8.0276

<0.001

Proteobacteria

 

−1.9962

0.004

Rhodobacter

−8.3502

<0.001

Citrobacter

−5.5939

<0.001

Sphingomonas

−3.5561

<0.001

Acinetobacter

−2.491

<0.001

Halomonas

2.7042

<0.001

Polynucleobacter

2.3841

0.002

Planctomycetes

 

−4.0278

<0.001

Verrucomicrobia

 

−4.6094

<0.001

  1. aAnalysis done using DESeq2 package. Positive values indicate higher abundance in swim bladder compared to distal intestine digesta. Negative values indicate lower abundance in swim bladder compared to distal intestine digesta.
  2. bAdjusted P value; accounts for multiple testing and controls the false discovery rate.
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