Table 1 The top 30 up- and downregulated lncRNAs and mRNA in ESCC tumor tissues compared with adjacent normal esophageal tissues.

From: Genome-wide analyses of long non-coding RNA expression profiles and functional network analysis in esophageal squamous cell carcinoma

Upregulated lncRNAs

Downregulated lncRNAs

Upregulated mRNAs

Downregulated mRNAs

GeneSymbol

Fold change

GeneSymbol

Fold change

Fold change

Fold change

GeneSymbol

Fold change

lnc-MMP10-3

1469.95

lnc-FLG2-1

816.99

SPP1

774.77

CRISP3

1701.30

lnc-MMP10-2

479.94

lnc-FLG2-2

459.18

MMP1

744.55

MAL

966.54

lnc-MMP3-1

104.95

lnc-KRT79-1

196.39

CST1

624.71

CRNN

671.34

lnc-PKD2-2

78.58

lnc-MTX2-6

180.21

MMP13

210.90

MUC21

611.75

lnc-CXCL6-2

76.84

lnc-KRT79-2

131.82

MMP12

149.47

FLG

590.34

lnc-LIPH-4

62.33

lnc-ANXA8L2-1

91.04

POPDC3

125.62

CLCA4

491.91

lnc-GULP1-4

61.28

lnc-LIPI-5

76.56

CALB1

121.32

UPK1A

470.63

lnc-GULP1-2

61.26

lnc-KRT36-1

72.72

COL1A1

109.90

SPINK7

301.17

lnc-SLCO1B3-1

41.18

RP11-641D5.2

62.08

POSTN

109.26

TMPRSS11B

300.16

lnc-DHX32-3

38.94

lnc-OCIAD1-1

59.97

SFRP4

105.51

IL36A

282.00

NONHSAG033144

34.13

lnc-EPGN-1

59.51

HOXD11

99.80

KRT4

271.47

lnc-XRCC4-6

34.01

lnc-LIPI-4

57.32

CASC9

89.95

LOC101927354

268.85

lnc-COL1A1-5

33.26

lnc-MC5R-11

57.23

IL8

89.55

CRCT1

264.57

lnc-DHX32-4

30.83

C21orf15

50.62

ADAM12

82.63

DYNAP

222.29

lnc-CXCL6-3

29.93

lnc-STXBP5-6

45.76

CXCL10

57.90

EPGN

220.81

lnc-LAMC1-1

27.78

lnc-TARS2-1

45.37

PLA2G7

51.47

KRT78

198.32

lnc-CASD1-2

27.75

lnc-AC073416.2-11

43.18

LAMC2

42.92

ENDOU

156.99

lnc-TRPC4-2

27.72

lnc-FAM25B-1

42.63

COL5A1

42.56

KRT13

148.28

lnc-ELMO1-2

27.58

OTTHUMG00000133684

42.61

OLFML2B

41.55

HPGD

139.61

lnc-FADD-2

27.12

lnc-KIF7-3

42.18

COL1A2

39.82

ALOX12

136.49

lnc-SAMD14-5

26.95

lnc-OCIAD1-2

40.82

MIR3606

38.79

FAM25A

125.79

lnc-GLI3-4

25.49

lnc-AC073416.2-11

40.81

NELL2

37.43

SCEL

123.57

LINC01296

23.48

lnc-PHC1-2

40.75

LOC101060271

36.96

CWH43

99.16

lnc-GULP1-3

21.70

lnc-ARID5B-1

40.39

THY1

36.52

PPP1R3C

93.55

lnc-ATP2B3-3

21.57

lnc-VSIG10L-2

38.78

AMTN

36.05

SH3BGRL2

92.50

lnc-NMI-2

20.30

lnc-AFAP1L1-3

37.14

ANO1

34.68

A2ML1

85.55

lnc-POTEM-2

19.78

lnc-SPRR1A-2

35.98

IFI6

34.25

EMP1

82.51

lnc-SMAD5-7

19.61

lnc-KRT15-2

34.92

RP1-27K12.2

33.41

FAM3B

73.05

lnc-GCG-1

19.51

HCG22

33.14

MFAP2

32.88

PADI1

67.12

lnc-POTEG-4

18.83

lnc-SPINK7-1

31.87

SLCO1B3

32.31

SERPINB2

66.37

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