Table 2 Indicator taxa.

From: A preliminary examination of bacterial, archaeal, and fungal communities inhabiting different rhizocompartments of tomato plants under real-world environments

Compartment	OTU	Phylum/Class	Order/Family/Genus	Indicator value	Relative abundance (%)
Compartment	OTU	Phylum/Class	Order/Family/Genus	Indicator value	B	R	E
Bulk	B_OTU13	Betaproteobacteria	Burkholderiales	0.778	1.38	0.12	0.02
	B_OTU43	Gammaproteobacteria	Unclassified	0.773	1.13	0.14	0.02
	B_OTU48	Betaproteobacteria	Burkholderiales	0.670	1.64	0.11	0.02
	B_OTU28	Betaproteobacteria	Burkholderiales	0.576	2.13	0.05	0.01
	F_OTU28	Ascomycota	Pyronemataceae	0.574	5.27	0.12	0
	A_OTU4	Thaumarchaeota	Nitrosopumilus	0.533	15.51	1.25	3.93
Rhizosphere	B_OTU106	Alphaproteobacteria	Phyllobacteriaceae	0.685	0.30	1.28	0.12
	B_OTU7	Actinobacteria	Microbacterium	0.676	0.24	2.42	0.76
	B_OTU4	Actinobacteria	Arthrobacter	0.667	0.41	3.18	0.16
	B_OTU2	Alphaproteobacteria	Sphingobium	0.664	0.16	10.68	2.43
	B_OTU50	Alphaproteobacteria	Sphingomonas	0.653	1.51	3.26	0.10
	B_OTU77	Alphaproteobacteria	Afipia	0.643	0.11	1.12	0.28
	B_OTU16	Actinobacteria	Leifsonia	0.641	0.19	1.11	0.42
	F_OTU799	Ascomycota	Hyphodiscus	0.633	0	0.01	0
	B_OTU35	Gammaproteobacteria	Luteimonas	0.603	0.66	2.27	1.14
	F_OTU364	Ascomycota	Aspergillus	0.574	0	0.03	0
	B_OTU15	Betaproteobacteria	Unclassified	0.547	0.41	1.01	0.03
	F_OTU609	Ascomycota	Trichoderma	0.535	0.01	0.03	0.0002
	F_OTU31	Ascomycota	Chrysosporium	0.525	0.14	1.46	0.01
	F_OTU158	Ascomycota	Oidiodendron	0.520	0	0.11	0.0003
Endosphere	B_OTU18	Gammaproteobacteria	Enterobacter	0.798	0.03	0.21	6.38
	B_OTU26	Betaproteobacteria	Acidovorax	0.767	0.01	0.16	2.84
	B_OTU33	Unclassified	Unclassified	0.750	0	0.002	4.22
	B_OTU19	Unclassified	Unclassified	0.735	0	0.002	11.42
	B_OTU45	Proteobacteria	Unclassified	0.725	0	0.0007	5.56
	B_OTU6	Betaproteobacteria	Variovorax	0.619	0.13	1.37	10.08
	B_OTU3	Gammaproteobacteria	Pseudomonas	0.580	0.43	1.19	10.37
	F_OTU42	Ascomycota	Alternaria	0.580	0	0.008	3.12
	F_OTU1464	Ascomycota	Alternaria	0.570	0	0.01	1.89
	F_OTU53	Ascomycota	Alternaria	0.569	0	0.008	2.14
	B_OTU17	Alphaproteobacteria	Rhizobium	0.568	0.01	0.52	1.67
	F_OTU121	Ascomycota	Alternaria	0.567	0	0.007	1.17
	F_OTU27	Ascomycota	Unclassified	0.561	0	0.02	5.92
	B_OTU23	Actinobacteria	Streptomyces	0.561	0.35	0.72	2.86
	F_OTU196	Ascomycota	Alternaria	0.546	0	0.001	0.69
	F_OTU477	Ascomycota	Alternaria	0.540	0	0.002	0.23
	F_OTU2	Ascomycota	Colletotrichum	0.523	0.02	1.26	25.91
	F_OTU295	Ascomycota	Alternaria	0.522	0	0.003	0.66
	B_OTU199	Gammaproteobacteria	Pseudomonas	0.512	0.12	0.11	1.27

The data table shows the results for the indicator species analysis with point biserial correlation. The OTUs with high indicator values (>0.5) and high abundances (>1% relative abundance) are listed. Abbreviations: B_OTU, bacterial OTU; F_OTU, fungal OTU; A_OTU, archaeal OTU; B, bulk soil; R, rhizosphere; E, endosphere. The significance level is p < 0.001.

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Table 2 Indicator taxa.

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