Table 4 Genes of H. seropedicae regulated during interaction with rice roots.
Locus_tag | Fold Change | p-value | ID Feature | Description | COG |
|---|---|---|---|---|---|
HSERO_RS17470 | 0.4 | 7.0E-04 | qor | qor NADPH:quinone oxidoreductase protein 4007887:4008915 forward | C;R - Energy production and conversion;General function prediction only |
HSERO_RS05670 | 30 | 6.20E-03 | Hsero_1130 | Hsero_1130 ABC-type dipeptide transporter, periplasmic peptide-binding protein 1287409:1289031 forward | E - Amino acid transport and metabolism |
HSERO_RS23580 | 27 | 7.70E-03 | urtA | UrtA ABC-type urea transport system, periplasmic component protein 5407999:5409252 forward | E - Amino acid transport and metabolism |
HSERO_RS00420 | 43 | 0.02 | glnK | GlnK nitrogen regulatory PII-like protein 99052:99390 forward | E - Amino acid transport and metabolism |
HSERO_RS07390 | 0.2 | 2.0E-04 | ttuC | TtuC tartrate dehydrogenase protein 1690575:1691654 reverse | G - Carbohydrate transport and metabolism |
HSERO_RS05635 | 84 | 0.02 | Hsero_1123 | Hsero_1123 family II aminotransferase protein 1278563:1279939 reverse | H - Coenzyme transport and metabolism |
HSERO_RS07590 | 0.1 | 2.0E-03 | rplS | RplS 50S ribosomal subunit protein L19 1731532:1731915 forward | J - Translation, ribosomal structure and biogenesis |
HSERO_RS03380 | 0.3 | 0.02 | ompW2 | OmpW2 outer membrane W protein 741190:741927 forward | M - Cell wall |
HSERO_RS12905 | 0.4 | 5.0E-03 | lon | Lon ATP-dependent protease LA protein 2940893:2943301 reverse | O - Posttranslational modification, protein turnover, chaperones |
HSERO_RS00425 | 20 | 0.04 | amtB | AmtB ammonium transporter transmembrane protein 99406:100938 forward | P - Inorganic ion transport and metabolism |
HSERO_RS14575 | 0.1 | 1.10E-03 | Hsero_2905 | Hsero_2905 conserved hypothetical protein 3301039:3301272 reverse | S - Function unknown |
HSERO_RS00415 | 15 | 0.03 | Hsero_0083 | Hsero_0083 membrane protein 98251:99039 forward | S - Function unknown |
HSERO_RS13665 | 90 | 1.90E-03 | Hsero_2723 | Hsero_2723 methyl-accepting chemotaxis transmembrane protein 3101951:3103597 reverse | T;N - Signal transduction mechanisms;Cell motility |
HSERO_RS06095 | 0.3 | 0.04 | trnK | TrnK tRNA-Lys 1374570:1374645 reverse | trnK |
HSERO_RS07375 | 0.2 | 1.7E-03 | trnL | TrnL tRNA-Leu 1689660:1689744 reverse | trnL |
HSERO_RS07775 | 0.1 | 0.03 | trnS | TrnS tRNA-Ser 1781783:1781873 forward | trnS |
