Table 1 aRmerge = Σhkl ΣI|Ii − Im|/Σhkl Σi Ii.
Data Collection | HtxB + phosphite (PDB:6EMN) | D206A HtxB + hypophosphite (PDB:6GHT) | D206N HtxB (PDB:6GHQ) |
|---|---|---|---|
Beamline | DLS, i04-1 | DLS, i04 | DLS, i03 |
Wavelength (Å) | 0.92819 | 0.97951 | 0.9718 |
Resolution (Å) | 50.62–1.25 | 50.64–1.12 | 39.49–1.53 |
(1.27–1.25) | (1.139–1.12) | (1.56–1.53) | |
Space group | P212121 | P212121 | P21212 |
Unit cell dimensions (a, b, c, α, β, γ) | 40.28, 55.2, 126.33, 90, 90, 90 | 40.08, 55.24, 125.9, 90, 90, 90 | 70.82, 118.47, 35.44, 90, 90, 90 |
Total reflectionsc | 463423 (17894) | 885584 (23864) | 319442 (45946) |
Unique reflectionsc | 78831 (3871) | 108281 (5252) | 45946 (2520) |
Multiplicityc | 5.9 (4.6) | 8.2 (4.5) | 6.7 (6.1) |
Completenessc (%) | 100 (99.9) | 99.9 (98.7) | 99.9 (99.6) |
Mean I/σc (I) | 9.3 (1.0) | 10.7 (0.4) | 19.1 (1.4) |
CC halfc | 0.998 (0.403) | 0.999 (0.322) | 0.999 (0.602) |
Rmergea,c | 0.094 (1.585) | 0.071 (2.78) | 0.037 (1.093) |
Rpimb,c | 0.046 (0.890) | 0.027 (1.59) | 0.017 (0.517) |
Refinement | |||
Rfactor | 0.15 | 0.16 | 0.19 |
Rfree | 0.17 | 0.19 | 0.21 |
RMSD bonds (Å) | 0.0152 | 0.0114 | 0.0099 |
RMSD angles (°) | 1.53 | 1.58 | 1.46 |
No. of non-H atoms | |||
Protein | 2028 | 2080 | 2087 |
Ligands | 13 | 11 | 27 |
Water | 238 | 243 | 225 |
Protein residues | 255 (Chain A; 7–262) | 260 (Chain A; 2–262) | 266 (Chain A; 2–268) |
Average B factors | |||
Main chain | 15.7 | 16.7 | 28.4 |
Side chains | 22.4 | 22.3 | 36.2 |
Ligands | 18.4 | 20.1 | 40.0 |
Water | 33.8 | 33.4 | 43.8 |
Ramachandran | |||
favored/allowed (%) | 97.7/2.3 | 97.7/2.3 | 98.1/1.9 |
Molprobity score | 1.02 (99th percentile; N = 2054, 1.25 ± 0.25 Å) | 1.28 (89th percentile; N = 958, 1.12 ± 0.25 Å) | 1.02 (99th percentile; N = 4917, 1.53 ± 0.25 Å) |