Table 1 aRmerge = Σhkl ΣI|Ii − Im|/Σhkl Σi Ii.

From: Phosphite binding by the HtxB periplasmic binding protein depends on the protonation state of the ligand

Data Collection

HtxB + phosphite (PDB:6EMN)

D206A HtxB + hypophosphite (PDB:6GHT)

D206N HtxB (PDB:6GHQ)

Beamline

DLS, i04-1

DLS, i04

DLS, i03

Wavelength (Å)

0.92819

0.97951

0.9718

Resolution (Å)

50.62–1.25

50.64–1.12

39.49–1.53

(1.27–1.25)

(1.139–1.12)

(1.56–1.53)

Space group

P212121

P212121

P21212

Unit cell dimensions (a, b, c, α, β, γ)

40.28, 55.2, 126.33, 90, 90, 90

40.08, 55.24, 125.9, 90, 90, 90

70.82, 118.47, 35.44, 90, 90, 90

Total reflectionsc

463423 (17894)

885584 (23864)

319442 (45946)

Unique reflectionsc

78831 (3871)

108281 (5252)

45946 (2520)

Multiplicityc

5.9 (4.6)

8.2 (4.5)

6.7 (6.1)

Completenessc (%)

100 (99.9)

99.9 (98.7)

99.9 (99.6)

Mean I/σc (I)

9.3 (1.0)

10.7 (0.4)

19.1 (1.4)

CC halfc

0.998 (0.403)

0.999 (0.322)

0.999 (0.602)

Rmergea,c

0.094 (1.585)

0.071 (2.78)

0.037 (1.093)

Rpimb,c

0.046 (0.890)

0.027 (1.59)

0.017 (0.517)

Refinement

Rfactor

0.15

0.16

0.19

Rfree

0.17

0.19

0.21

RMSD bonds (Å)

0.0152

0.0114

0.0099

RMSD angles (°)

1.53

1.58

1.46

No. of non-H atoms

Protein

2028

2080

2087

Ligands

13

11

27

Water

238

243

225

Protein residues

255 (Chain A; 7–262)

260 (Chain A; 2–262)

266 (Chain A; 2–268)

Average B factors

Main chain

15.7

16.7

28.4

Side chains

22.4

22.3

36.2

Ligands

18.4

20.1

40.0

Water

33.8

33.4

43.8

Ramachandran

favored/allowed (%)

97.7/2.3

97.7/2.3

98.1/1.9

Molprobity score

1.02 (99th percentile; N = 2054, 1.25 ± 0.25 Å)

1.28 (89th percentile; N = 958, 1.12 ± 0.25 Å)

1.02 (99th percentile; N = 4917, 1.53 ± 0.25 Å)

  1. bRpim = Σhkl \(\surd 1\)/n − 1 Σi=1|Ii − Im|/Σhkl Σi Ii, where Ii and Im are the observed intensity and mean intensity of related reflections, respectively. cValues in parenthesis are for data in the high-resolution shell.