Table 6 Specific PCR Primer sequence and reaction conditions of MT-ND2 (Product size ≈ 1000 bp), MT-ND5 (≈347 bp), MT-ATP6 (≈673 bp), MT-ATP8 (≈110 bp) and MT-CYB (≈523 bp).

From: Mitochondrial DNA sequencing reveals association of variants and haplogroup M33a2′3 with High altitude pulmonary edema susceptibility in Indian male lowlanders

Gene

Primers (bp)

Product

Annealing temp.

No. of cycles

MT-ND2

5′ATTAATCCCCTGGCCCAACC3′

1000

48

30

5′TGGTAAGGGCGATGAGTGTG3′

MT-ND5

5′CGGAAGCCTATTCGCAGGAT3′

347

48

28

5′TGGAGGTGGAGATTTGGTGC3′

MT-ATP6

5′CTCACCAAAGCCCATAAA3′

673

52

35

5′AGGCGACAGCGATTTCTA3′

MT-ATP8 5′ACTACCACCTACCTCCCTCAC3′

 

110

49

30

5′GGATTGTGGGGGCAATGAATG3′

MT-CYB

5′GGGACAGACCTAGTTCAATG3′

523

55

35

5′CTGCGGCTAGGAGTCAATAA3′