Table 3 The screening of genome variation between CHP and L2025 compared with the reference genome based on the whole genome resequencing.

From: Integrated physiological and genomic analysis reveals structural variations and expression patterns of candidate genes for colored- and green-leaf poplar

 

L2025

CHP

Total reads

106,415,483

108,920,101

Total size (bp)

4,723,926,206

4,876,051,559

Sequencing depth

37.2371x

38.4297x

Mapped reads

100,732,805 (94.7%)

103,464,008 (95.0%)

Properly paired reads

98,599,707

101,402,196

Consensus sequence (bp)

410444509

410845308

Genome coverage

95.7%

95.8%

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