Table 4 The statistics of genes involved in the flavonoid biosynthesis carrying polymorphic SNPs in coding regions between CHP and L2025.

From: Integrated physiological and genomic analysis reveals structural variations and expression patterns of candidate genes for colored- and green-leaf poplar

Gene ID

SNP numbers in coding regions

Description

Potri.013G073300

0

trans-cinnamate 4-hydroxylase [Populus tremuloides]

Potri.018G146100

0

trans-cinnamate 4-hydroxylase [Populus trichocarpa]

Potri.014G145100

0

chalcone synthase [Populus alba]

Potri.010G104400

0

caffeoyl-CoA O-methyltransferase-like [Populus euphratica]

Potri.009G069100

0

flavonoid 3′,5′-hydroxylase 2 isoform 1 [Theobroma cacao]

Potri.005G229500

0

dihydroflavonol-4-reductase [Vitis vinifera]

Potri.004G139700

0

flavonol synthase 1 family protein [Populus trichocarpa]

Potri.003G176700

0

chalcone synthase 1-like isoform X1 [Populus euphratica]

Potri.003G119100

0

leucoanthocyanidin dioxygenase-like [Populus euphratica]

Potri.002G127500

0

dihydroflavonol-4-reductase [Zea mays]

Potri.002G033600

0

dihydroflavonol reductase [Populus tremuloides]

Potri.001G274600

0

flavonoid 3′,5′-hydroxylase 2 [Petunia hybrida]

Potri.015G050200

1

leucoanthocyanidin reductase [Desmodium uncinatum]

Potri.012G138800

1

stilbene synthase 4 OS = (Grape) PE = 3 SV = 1 [Vitis vinifera]

Potri.003G176800

1

naregenin-chalcone synthase family protein [Populus trichocarpa]

Potri.001G051600

1

naregenin-chalcone synthase family protein [Populus trichocarpa]

Potri.001G051500

1

naregenin-chalcone synthase family protein [Populus trichocarpa]

Potri.013G073300

1

flavonoid 3′-monooxygenase [Petunia hybrida]

Potri.005G113700

2

naringenin-2-oxoglutarate 3-dioxygenase [Vitis vinifera]

Potri.005G113900

2

naringenin-2-oxoglutarate 3-dioxygenase [Vitis vinifera]

Potri.010G129800

2

leucoanthocyanidin reductase [Desmodium uncinatum]

Potri.010G213000

2

chalcone isomerase family protein [Populus trichocarpa]

Potri.003G176900

3

PREDICTED: chalcone synthase 1 [Populus euphratica]

Potri.003G183900

3

shikimate O-hydroxycinnamoyltransferase [Arabidopsis thaliana]

Potri.004G030700

3

leucoanthocyanidin reductase family protein [Populus trichocarpa]

Potri.005G028000

5

shikimate O-hydroxycinnamoyltransferase-like [Populus euphratica]

Potri.004G139500

9

flavonol synthase 1 family protein [Populus trichocarpa]