Table 2 A list of the chimeric reads detected in the analysis of J1.1 cell (Top 10 reads are shown).
From: HIV-1 DNA-capture-seq is a useful tool for the comprehensive characterization of HIV-1 provirus
IS | Left read of IS | Right reads of IS | Total reads | Strand | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
Chr | Start site | End site | # reads | Chr | Start site | End site | # reads | |||
#1 | chr3 | 49815218 | 49815293 | 1 | chr3 | 49815620 | 49815696 | 1 | 2 | − |
#2 | chr11 | 684719 | 685244 | 84 | chr11 | 685238 | 685721 | 97 | 181 | − |
#3 | chr12 | 54651116 | 54651758 | 75 | chr12 | 54651752 | 54652181 | 47 | 122 | − |
#4 | chr1 | 4925435 | 4925511 | 1 | . | . | . | . | 1 | − |
#5 | chr1 | 32116270 | 32116346 | 1 | . | . | . | . | 1 | + |
#6 | chr1 | 59477002 | 59477077 | 1 | . | . | . | . | 1 | − |
#7 | chr1 | 68686233 | 68686308 | 1 | . | . | . | . | 1 | + |
#8 | chr1 | 98403969 | 98404045 | 1 | . | . | . | . | 1 | − |
#9 | chr1 | 101661625 | 101661701 | 1 | . | . | . | . | 1 | + |
#10 | chr1 | 115758154 | 115758230 | 1 | . | . | . | . | 1 | − |
