Figure 3 | Scientific Reports

Figure 3

From: Analyses of virus/viroid communities in nectarine trees by next-generation sequencing and insight into viral synergisms implication in host disease symptoms

Figure 3

Identification and quantification of the pathogen-associated sequencing reads for the viruses/viroids infecting tree samples T01 and T02 using sRNA sequencing. (A) The numbers of assembled viral contigs associated with known viruses and viroids in samples T01 and T02 from greenhouse #1. (B) The percentage of virus or viroid-associated reads in each sample was calculated as the number of viral reads divided by the number of clean sRNA sequencing reads (x 100). (C) And by the total number of pathogen reads from all identified viruses and viroids (x 100). The reads from APV1 and APV3 were combined (“APVs”) due to their high degree of sequence similarity. Sequencing reads that aligned to another 11 contigs with identities to marafi-, tymo-, and maculaviruses, corresponding to segments with low sequence similarity that may be a novel unknown virus in the family Tymoviridae, were combined as “other”.

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