Table 1 Transcriptome assembly summary statistics.

From: Transcriptome and gene expression analysis of three developmental stages of the coffee berry borer, Hypothenemus hampei

Assembly Statistic

Prefiltered assembly*

Postfiltered assembly

Number of Unigenes

80,046

29,434

Number of Contigs

116,587

53,978

GC %

34.99

35.77

Completed BUSCOs

 

1,054 (98.9%)

Single-copy BUSCOs

 

536 (50.3%)

Duplicated BUSCOs

 

518 (48.6%)

Contigs

Contigs

Unigenes

Contigs

Unigenes

Median (bp)

705

573

1,549

1,114

Mean (bp)

1,258.25

970.67

1,975.49

1,609.92

Total assembled bases:

146,695,858

77,697,918

106,632,933

47,386,471

Contig N10 (bp)

5,626

4,739

6250

5735

Contig N30 (bp)

3,288

2,546

3948

3551

Contig N50 (bp)

2,079

1,388

2795

2427

  1. *Prefiltered assembly includes noncoding and contaminant sequences.
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