Table 3 Variants identified in affected subjects.

From: Exome Sequencing Reveals Immune Genes as Susceptibility Modifiers in Individuals with α1-Antitrypsin Deficiency

Gene name

SNP ID

wild type allele

AWK (family 3)

AWL (family 185)

BIR (family 237)

BIP (family 114)

Recessive Inheritance Model

AKNA

rs3748176

G

 

A/A

A/A

A/A

DNTTIP2

rs3747965

C

 

A/A

A/A

A/A

FRMD1

rs1548349

G

C/C

C/C

 

C/C

HJURP

rs3806589

T

 

C/C

 

C/C

HJURP

rs3732215

G

C/C

C/C

 

C/C

IFIH1

rs3747517

T

 

C/C

C/C

C/C

KLHL3

rs2905608

T

C/C

C/C

 

C/C

KNG1

rs710446

T

C/C

C/C

C/C

 

MIB2

rs7418389

T

 

C/C

C/C

C/C

MS4A14

rs3217518

ATT

 

A/A

A/A

A/A

RTP2

rs11707167

T

C/C

 

C/C

C/C

SLC22A16

rs714368

T

C/C

C/C

 

C/C

THSD7B

rs10206850

A

G/G

G/G

G/G

 

TMPRSS5

rs7110736

A

 

G/G

G/G

G/G

TSPAN8

rs3763978

C

 

G/G

G/G

G/G

Dominant Inheritance Model

ACBD3

novel*

CTTTTTTTT

CTTTTTTT

CTTTTTTT

 

CTTTTTTT

ALAD

rs1800435

C

 

C/G

C/G

C/G

APEX1

rs1130409

T

 

T/G

T/G

T/G

EGFL8

rs3096697

G

 

G/A

G/A

G/A

HSD17B4

rs25640

G

G/A

G/A

G/A

 

IQCG

rs9880989

G

G/T

 

G/T

G/T

KLC2

rs2276036

C

C/T

 

C/T

C/T

L3MBTL4

rs3737353

C

 

C/T

C/T

C/T

LIPK

rs1214464

G

G/C

G/C

G/C

 

LRCH4

novel*

GTC

 

GC

GC

GC

MKI67

rs8473

T

T/C

T/C

T/C

 

MKI67

rs11106

G

G/C

G/C

G/C

 

MS4A12

rs2298553

C

C/T

C/T

 

C/T

PCDH12

rs164515

C

C/T

C/T

 

C/T

PIK3AP1

rs17112076

C

 

C/T

C/T

C/T

PPT2

rs3096696 (EVS)

C

 

C/A

C/A

C/A

PRDM16

rs2493292

C

 

C/T

C/T

T/T

TBC1D26

rs11650318

C

C/T

 

C/T

C/T

TBC1D26

rs17855672

G

G/A

 

G/A

G/A

TRIM16

rs1060903

C

 

C/A

C/A

C/A

TSPYL1

rs3828743

G

G/A

 

G/A

G/A

VSTM4

rs13088

A

 

A/G

A/G

A/G

ZNF286A

rs3760299

T

T/C

 

T/C

T/C

  1. Definition of abbreviations: SNP: single nucleotide polymorphism; EVS = present in Exome Variant Server. *novel = not present in any public database. Genes linked to immunity are shown in bold and underlined characters.
  2. 57% of the genes in the recessive inherited model and 29% in the dominant were immune.