Table 2 Comparison of the kinks angles, overall bend angles and dihedral angles for DNAs in complex with the MC1 (this work), HU48, IHF46,47 and TFAM39,44 proteins.
From: New protein-DNA complexes in archaea: a small monomeric protein induces a sharp V-turn DNA structure
Protein-DNA complex | Kink 1 (°) | Kink 2 (°) | Overall bend (°) | Dihedral angle (°) | PDB code [ref] |
|---|---|---|---|---|---|
MC1–15bp | 55 | 70 | 66 | 106 | 2NBJ |
AHU2–19bp | 77 | 82 | 105 | 73 | 1P7848 |
TR3–19bp | 74 | 84 | 106 | 72 | 1P7148 |
AHU6a-17bp | 91 | 85 | 130 | 50 | 1P5148 |
AHU6b-17bp | 89 | 82 | 139 | 40 | 1P5148 |
IHF-35bp | 93 | 87 | 163 | 15 | 1IHF46 |
Hbb-35bp | ~90 | ~90 | ~180 | <5 | 2NP247 |
TFAM-22bp | ~90 | ~90 | ~180 | 0 | 3TQ644 |
TFAM-28bp | ~90 | ~90 | ~180 | 0 | 3TMM39 |
