Figure 2
Manhattan plot and linkage disequilibrium (LD) plot of sex-specific polymorphisms in scaffold_064. (a) The polymorphisms in the shaded region include variant sites that attained the genome-wide significance threshold (p-values < 5 × 10−8), approximately 6.5 kb. (b) LD block was determined by Haploview 4.2, with an LD-based partitioning algorithm. The colour scheme of the logarithm of the odds (LOD) score and D’ indicate: red: D’ = 1 and LOD ≥ 2; blue: D’ = 1 and LOD < 2; and white: D’ < 1 and LOD < 2. The largest LD block is 3,174 bp.
