Table 3 Male-specific variants in scaffold_064.

From: Improvement of the Pacific bluefin tuna (Thunnus orientalis) reference genome and development of male-specific DNA markers

Position (bp)

Allele

Genotype (Ref/Het/Alt)

p-value

Reference

Alternative

Females

Males

3723782

A

T

16/0/0

0/15/0

3.33E-09

3723876

A

G

16/0/0

0/15/0

3.33E-09

3723925

T

C

16/0/0

0/15/0

3.33E-09

3724050

C

T

16/0/0

0/15/0

3.33E-09

3724051

A

G

16/0/0

0/15/0

3.33E-09

3724070

A

G

16/0/0

0/15/0

3.33E-09

3724479

G

T

16/0/0

0/15/0

3.33E-09

3724481

T

G

16/0/0

0/15/0

3.33E-09

3724494

C

T

16/0/0

0/15/0

3.33E-09

3724556

C

T

16/0/0

0/15/0

3.33E-09

3724561

C

A

16/0/0

0/15/0

3.33E-09

3724625

T

G

16/0/0

0/15/0

3.33E-09

3724697

GTAATGTA

G

16/0/0

0/15/0

3.33E-09

3725864

T

C

16/0/0

0/15/0

3.33E-09

3725869

G

A

16/0/0

0/15/0

3.33E-09

3725870

C

T

16/0/0

0/15/0

3.33E-09

3725892

C

T

16/0/0

0/15/0

3.33E-09

3725903

G

A

16/0/0

0/15/0

3.33E-09

3725915

G

A

16/0/0

0/15/0

3.33E-09

3725924

G

C

16/0/0

0/15/0

3.33E-09

3725968

G

A

16/0/0

0/15/0

3.33E-09

3725974

G

A

16/0/0

0/15/0

3.33E-09

3726082

A

G

16/0/0

0/15/0

3.33E-09

3726098

C

T

16/0/0

0/15/0

3.33E-09

3726136

G

T

16/0/0

0/15/0

3.33E-09

3726155

A

G

16/0/0

0/15/0

3.33E-09

3726182

G

T

16/0/0

0/15/0

3.33E-09

3726338

G

C

16/0/0

0/15/0

3.33E-09

3726374

T

C

16/0/0

0/15/0

3.33E-09

3726420

G

A

16/0/0

0/15/0

3.33E-09

3726427

A

T

16/0/0

0/15/0

3.33E-09

3726477

C

T

16/0/0

0/15/0

3.33E-09

3726480

T

A

16/0/0

0/15/0

3.33E-09

3726530

C

T

16/0/0

0/15/0

3.33E-09

3726649

G

T

16/0/0

0/15/0

3.33E-09

3726723

T

A

16/0/0

0/14/0

6.88E-09

3726751

A

G

16/0/0

0/15/0

3.33E-09

3726760

C

T

16/0/0

0/15/0

3.33E-09

3726826

C

T

16/0/0

0/15/0

3.33E-09

3727016

C

T

16/0/0

0/15/0

3.33E-09

3727037

A

G

16/0/0

0/15/0

3.33E-09

3727050

C

T

16/0/0

0/15/0

3.33E-09

3727069

C

T

16/0/0

0/15/0

3.33E-09

3729537

C

A

16/0/0

0/15/0

3.33E-09

3729736

C

T

16/0/0

0/15/0

3.33E-09

3729866

T

C

16/0/0

0/15/0

3.33E-09

3730062

C

A

16/0/0

0/15/0

3.33E-09

3730221

C

T

16/0/0

0/15/0

3.33E-09

3730222

G

A

16/0/0

0/15/0

3.33E-09

3730268

C

T

16/0/0

0/15/0

3.33E-09

3730295

T

A

16/0/0

0/15/0

3.33E-09

  1. All polymorphisms have homozygous in all females (n = 16) and heterozygous in all males (n = 14 or 15), where p-values are significant using Fisher’s exact test.
  2. Ref; homozygous reference (Tuna_2), Het; heterozygous, Alt; homozygous alternative.