Figure 2 | Scientific Reports

Figure 2

From: Expression regulation of myo-inositol 3-phosphate synthase 1 (INO1) in determination of phytic acid accumulation in rice grain

Figure 2

SNP-based GWAS results for PA. (A) Quantile-quantile (Q-Q) plot of GLM and MLM models (B) Manhattan plots of WRC PA content based on GWAS. Negative log10 transformed p-values are plotted against their position on each of the 12 chromosomes. The horizontal red line represents the genome-wide significance threshold −log10(P) value of 4.5 (C) Visualized phenotypic variation in PA content in WRC accessions for each haplotype formed by the 10 most significant SNPs (SNP 1 to SNP 10) as identified by GWAS (Table 1). Box plots were created using the ggplot2 package in R (version 3.5.3). Green and orange colors represent the minor and major alleles, respectively.

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