Table 2 Top 10 DE genes for each comparison based on adjusted p-value.

From: Differential expression and co-expression gene network analyses reveal molecular mechanisms and candidate biomarkers involved in breast muscle myopathies in chicken

Gene symbol*

Gene ID

Description

Adjusted p-value

log FC

FG.C vs. SG

MUSTN1

404773

musculoskeletal, embryonic nuclear protein 1

9.39 × 10−14

5.02

GOLGB1

426868

golgin B1

1.36 × 10−12

−2.80

TNNT2

396433

troponin T2, cardiac type

1.63 × 10−12

4.87

RGCC

418833

regulator of cell cycle

1.63 × 10−12

4.09

PIH1D3

422184

PIH1 domain containing 3

2.27 × 10−12

−2.25

MTPN

395702

myotrophin

3.82 × 10−12

1.83

DUSP5

423890

dual specificity phosphatase 5

4.12 × 10−12

3.84

SPP1

395210

secreted phosphoprotein 1

4.20 × 10−12

6.45

RPS6KA1L

396579

ribosomal protein S6 kinase A1-like

4.20 × 10−12

2.37

RUNX1

396152

runt-related transcription factor 1

7.43 × 10−12

3.22

FG-WSWB vs. SG

TNNT2

396433

troponin T2, cardiac type

6.44 × 10−16

7.08

TNNT1

396009

troponin T1, slow skeletal type

2.09 × 10−15

5.85

TUBAL3

416694

tubulin alpha like 3

2.09 × 10−15

4.38

KCNK2

770954

potassium two pore domain channel subfamily K member 2

2.09 × 10−15

4.79

RPS6KA1L

396579

ribosomal protein S6 kinase A1-like

2.09 × 10−15

3.35

MUSTN1

404773

musculoskeletal, embryonic nuclear protein 1

2.09 × 10−15

5.18

APTX

395173

aprataxin

2.09 × 10−15

−2.86

MYH15

395534

myosin heavy chain 15

3.12 × 10−15

7.37

MDK

423196

midkine

4.40 × 10−15

5.21

VDAC1

416320

voltage dependent anion channel 1

4.40 × 10−15

−2.76

FG-WSWB vs. FG-C

AKR1D1

418107

aldo-keto reductase family 1 member D1

1.91 × 10−11

4.08

FBLN1

373979

fibulin 1

5.16 × 10−11

3.85

FN1

396133

fibronectin 1

6.17 × 10−11

2.42

TNFAIP6

424315

TNF alpha induced protein 6

6.86 × 10−11

3.38

MDK

423196

midkine

7.21 × 10−11

3.62

ENPP2

420361

ectonucleotide pyrophosphatase/phosphodiesterase 2

1.72 × 10−10

2.93

OLFML3

419882

olfactomedin like 3

1.72 × 10−10

1.98

FKBP10

427013

FK506 binding protein 10

1.72 × 10−10

1.94

CCDC180

772014

coiled-coil domain containing 180

3.59 × 10−10

−1.76

CTHRC1

420262

collagen triple helix repeat containing 1

5.66 × 10−10

4.22

  1. *Common genes between two or three comparisons are indicated in bold.
Back to article page