Table 1 Summary statistics for the de novo assembly.
Category | Value |
|---|---|
Total transcripts | 207,739 |
GC (%) | 45.87 |
All transcript contigs | |
N50 transcript length (bp) | 1,889 |
median contig length (bp) | 809 |
mean contig length (bp) | 1,343 |
total assembled bases | 278,915,174 |
Annotation | |
Transcripts with BLAST hits | 144,119 (69.4%) |
Transcripts with ≥70% identity and ≥50% coverage | 22,825 (11.0%) |
Genes with unique BLAST match | 14,717 (7.1%) |
