Table 1 Statistics from digital gene expression sequencing.
From: Gene expression profile analysis of ileum transcriptomes in pigs fed Gelsemium elegans plants
Sample_name | C1 | C2 | C3 | G1 | G2 | G3 |
|---|---|---|---|---|---|---|
Raw reads | 53351960 | 52203452 | 62621280 | 50860180 | 53702840 | 40267710 |
Clean reads | 52354682 | 50836840 | 61569634 | 49898956 | 52727580 | 39636068 |
Clean bases (Gb) | 7.39 | 7.24 | 8.70 | 7.05 | 7.49 | 5.63 |
Q20(%) | 97.10% | 96.95% | 97.10% | 96.80% | 96.95% | 97.45% |
Q30(%) | 92.20% | 91.90% | 92.20% | 91.60% | 91.80% | 92.95% |
Total mapped | 50591699 (96.60%) | 49185332 (96.80%) | 58949697 (95.70%) | 47391403 (95%) | 50409079 (95.60%) | 38280432 (96.60%) |
Multiple mapped | 2682859 | 2066081 | 3841841 | 3278765 | 3483805 | 2173146 |
Uniquely mapped | 47908840 | 47119251 | 55107856 | 44112638 | 46925274 | 36107286 |
Reads map to ‘+‘ | 23954389 | 23559590 | 27553907 | 22056319 | 23462604 | 18053653 |
Reads map to ‘-‘ | 23954451 | 23559661 | 27553949 | 22056319 | 23462670 | 18053633 |
Non-Splice reads | 26179110 | 26211625 | 31002946 | 24250115 | 26227333 | 20306368 |
Splice reads | 21729730 | 20907626 | 24104910 | 19862523 | 20697941 | 15800918 |
