Figure 2

Interactions between miRNAs, lncRNAs, and mRNAs. (a) The number of miRNA-mRNA targets based on different sequence regions in both predicted and previously reported miRNA-targeted mRNAs. The 3′-UTR, 5′-UTR, and CDS were the regions of the targeted mRNAs that were used for the predictions. (b) A Venn plot of the miRNA-mRNA target predictions based on different regions. (c) A summary of the miRNA-lncRNA targets for both the predicted and previously reported interactions. (d) A summary of the lncRNA-mRNA targets for both the predicted and previously reported miRNA-targeted lncRNAs. Venn plots for the interactions of significantly DE miRNAs and mRNAs (e), miRNAs and lncRNAs (f), lncRNAs and mRNAs (h). and (g). A co-expression network of the MLMI based on weighted Pearson’s correlations (GS1: average gene significance; cyan: module 1; blue: module 2; and gray: non-modules).