Table 1 Comparison of sequenced Naegleria genomes.
From: Nanopore sequencing improves the draft genome of the human pathogenic amoeba Naegleria fowleri
N. fowleri ATCC 30894 | N. fowleri ATCC 30863 21 | N. lovaniensis 40 | N. gruberi 39 | |
|---|---|---|---|---|
GeneBank accession | VFQX00000000 | AWXF00000000 | PYSW00000000 | ACER00000000 |
Genome Size (Mb) | 29.5 | 27.7 | 30.2 | 40.9 |
GC content (%) | 36.9 | 37 | 37 | 35 |
Repeat content (%) | 6 | 2.5 | 3.5 | 5.1 |
Number of contigs (Scaffolds) | 90 | 1729 (574) | 111 | 1977 (784) |
N50 (bp) | 717,491 | 38,128 | 658,530 | 159,679 |
L50 | 18 | 212 | 21 | 68 |
Number of predicted genes | 13,925 | 17,252 (based on RNAseq data) | 15,195 | 16,620 |
