Table 2 Features of begomovirus and betasatellite clones isolated from field infected tomato plants.
Clone | Begomovirus genome/DNA A component | DNA B/Betasatellite | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Virus | Acc. no.# | Size (nt) | Position of genes [coordinates]/no. of amino acids (predicted coding capacity in kDa) | ||||||||||
CP | (A)V2 | Rep | TrAP | REn | (A)C4 | Clone | Segment/acc. no.# | Size (nt) | Position of BV1/BC1 or βC1gene (coordinates)/no. of amino acids [predicted coding capacity in kDa] | ||||
Tom 26–4 | MYMIV DNA A | MK757218 | 2,746 | 316–1089 257 (29.7) | 141–497 118 (13.53) | 1538–2626 362 (41.30) | 1228–1680 150 (17.24) | 1086–1490 134 (15.7) | 2176–2475 99 (11.36) | Tom 26-7 | MYMIV DNA B/ MK757222 | 2,652 | 419–1189 267 (30.47)/1220–2116 298 (33.76) |
Tom 26–10 | TYLCV | MK757238 | 2,767 | 304–1080 258 (30) | 144–494 116 (13.43) | 1553–2617 354 (39.2) | 1222–1629 135 (16) | 1077–1481 134 (15.7) | 2167–2466 99 (11.36) | Tom 26–11 | ToLCB MK757226 | 1,384 | 201–557 118 (13.62) |
Tom 26–12 | ChiLCV | MK757212 | 2,761 | 309–1082 257 (29.7) | 149–514 121 (14) | 1531–2616 343 (40) | 1242–1628 120 (13.2) | 1079–1483 127 (14.7) | 2166–2459 91 (10.4) | — | — | — | — |
Tom 26–16 | ToLCBrV | MK757232 | 2,753 | 301–1077 258 (30) | 141–491 116 (13.43) | 1526–2611 361 (39.2) | 1219–1623 134 (15.7) | 1074–1478 134 (15.7) | 2197–2454 85 (11.36) | — | — | — | — |
Tom 30–6 | MYMIV DNA A | MK757219 | 2,746 | 316 –1089 257 (29.7) | 141–497 118 (13.53) | 1538–2626 362 (41.30) | 1228–1680 150 (17.24) | 1086–1490 134 (15.7) | 2176–2475 99 (11.36) | Tom 30–13 | MYMIV DNA B/ MK757223 | 2,652 | 419–1189 267 (30.47)/1220–2116 298 (33.76) |
Tom 30–3 | TYLCV | MK757239 | 2,768 | 305–1081 258 (30) | 145–495 116 (13.43) | 1554–2618 354 (39.2) | 1223–1630 135 (16) | 1078–1482 134 (15.7) | 2168–2467 99 (11.36) | Tom 30–9 | ToLCB/ MK757227 | 1,376 | 201–557 118 (13.62) |
Tom 30–19 | ChiLCV | MK757213 | 2,761 | 309–1082 257 (29.7) | 149–514 121 (14) | 1531–2616 343 (40) | 1242–1628 120 (13.2) | 1079–1483 127 (14.7) | 2166–2459 91 (10.4) | — | — | — | — |
Tom 30–21 | ToLCBrV | MK757233 | 2,753 | 301–1077 258 (30) | 141–491 116 (13.43) | 1526–2611 361 (39.2) | 1219–1623 134 (15.7) | 1074–1478 134 (15.7) | 2197–2454 85 (11.36) | — | — | — | — |
Tom 31–1 | MYMIV DNA A | MK757220 | 2,746 | 316 –1089 257 (29.7) | 141–497 118 (13.53) | 1538–2626 362 (41.30) | 1228–1680 150 (17.24) | 1086–1490 134 (15.7) | 2176–2475 99 (11.36) | Tom 31–15 | MYMIV DNA B/ MK757224 | 2,652 | 419–1189 267 (30.47)/ 1220–2116 298 (33.76) |
Tom 31–5 | TYLCV | MK757240 | 2,768 | 305–1081 258 (30) | 145–495 98 (13.42) | 1554–2618 354 (39.2) | 1223–1630 135 (16) | 1078–1482 134 (15.7) | 2168–2467 99 (11.36) | Tom 31–14 | ToLCB/ MK757228 | 1,376 | 201–557 118 (13.62) |
Tom 31–23 | ChiLCV | MK757214 | 2,761 | 309–1082 257 (29.7) | 149–514 121 (14) | 1531–2616 343 (40) | 1242–1628 120 (13.2) | 1079–1483 127 (14.7) | 2166–2459 91 (10.4) | — | — | — | — |
Tom 31–24 | ToLCBrV | MK757234 | 2,753 | 301–1077 258 (30) | 141–491 116 (13.43) | 1526–2611 361 (39.2) | 1219–1623 134 (15.7) | 1074–1478 134 (15.7) | 2197–2454 85 (11.36) | — | — | — | — |
Tom 32–29 | TYLCV | MK757241 | 2,765 | 291–1067 258 (30) | 131–481 116 (13.43) | 1540–2604 354 (39.2) | 1209–1616 135 (16) | 1064–1468 134 (15.7) | 2154–2447 97 (11.36) | Tom 32–37 | ToLCB/ MK757229 | 1,376 | 201–557 118 (13.62) |
Tom 32–30 | ChiLCV | MK757215 | 2,761 | 309–1082 257 (29.7) | 149–514 121 (14) | 1531–2616 343 (40) | 1242–1628 120 (13.2) | 1079–1483 127 (14.7) | 2166–2459 91 (10.4) | — | — | — | — |
Tom 32–31 | ToLCBrV | MK757235 | 2,753 | 301–1077 258 (30) | 141–491 116 (13.43) | 1526–2611 361 (39.2) | 1219–1623 134 (15.7) | 1074–1478 134 (15.7) | 2197–2454 85 (11.36) | — | — | — | — |
Tom 34–33 | TYLCV | MK757242 | 2,765 | 291–1067 258 (30) | 131–481 116 (13.43) | 1540–2604 354 (39.2) | 1209–1616 135 (16) | 1064–1468 134 (15.7) | 2154–2447 97 (11.36) | Tom 34–38 | ToLCB/ MK757230 | 1,376 | 201–557 118 (13.62) |
Tom 34–34 | ChiLCV | MK757216 | 2,761 | 309–1082 257 (29.7) | 149–514 121 (14) | 1531–2616 343 (40) | 1242–1628 120 (13.2) | 1079–1483 127 (14.7) | 2166–2459 91 (10.4) | — | — | — | — |
Tom 34–35 | ToLCBrV | MK757236 | 2,753 | 301–1077 258 (30) | 141–491 116 (13.43) | 1526–2611 361 (39.2) | 1219–1623 134 (15.7) | 1074–1478 134 (15.7) | 2197–2454 85 (11.36) | — | — | — | — |
Tom 35–8 | MYMIV DNA A | MK757221 | 2,748 | 316–1089 257 (29.7) | 141–497 118 (13.53) | 1539–2627 362 (41.30) | 1229–1681 150 (17.24) | 1108–1491 127 (14) | 2177–2476 99 (11.36) | Tom 35–18 | MYMIV DNA B/ MK757225 | 2,652 | 419–1189 267 (30.47)/1220–2116 298 (33.76) |
Tom 35–20 | TYLCV | MK757243 | 2,755 | 292–1068 258 (30) | 132–482 116 (13.43) | 1541–2605 354 (39.2) | 1210–1617 135 (16) | 1065–1469 134 (15.7) | 2155–2430 99 (11.36) | Tom 35–2 | ToLCB/ MK757231 | 1,375 | 201–557 118 (13.62) |
Tom 35–26 | ChiLCV | MK757217 | 2,761 | 309–1082 257 (29.7) | 149–514 121 (14) | 1531–2616 343 (40) | 1242–1628 120 (13.2) | 1079–1483 127 (14.7) | 2166–2459 91 (10.4) | — | — | — | — |
Tom 35–27 | ToLCBrV | MK757237 | 2,753 | 301–1077 258 (30) | 141–491 116 (13.43) | 1526–2611 361 (39.2) | 1219–1623 134 (15.7) | 1074–1478 134 (15.7) | 2197–2454 85 (11.36) | — | — | — | — |
