Table 3 Composition and skewness in PCGs, tRNAs, rRNAs, and CR Region of different Palaemoninae mitogenomes.
Species | Size (bp) | Nucleotide composition/% | AT-skew | GC-skew | ||||
|---|---|---|---|---|---|---|---|---|
A | G | T (U) | C | A + T (U) | ||||
PCGs | ||||||||
P. sinensis | 11166 | 34.8 | 12.9 | 28.9 | 23.4 | 63.7 | 0.093 | −0.289 |
P. serenus | 11076 | 21.7 | 21.3 | 34.3 | 22.7 | 56.0 | −0.225 | −0.032 |
P. capensis | 11128 | 27.8 | 16.4 | 39.0 | 16.8 | 66.8 | −0.168 | −0.012 |
P. gravieri | 11125 | 27.1 | 17.0 | 38.1 | 17.8 | 65.2 | −0.169 | −0.023 |
P. gravieri | 11128 | 27.2 | 17.0 | 38.0 | 17.8 | 65.2 | −0.166 | −0.023 |
E. annandalei | 11126 | 25.3 | 18.3 | 36.2 | 20.2 | 61.5 | −0.177 | −0.049 |
E. modestus | 11136 | 27.2 | 16.9 | 37.9 | 18.0 | 65.1 | −0.164 | −0.032 |
E. carinicauda | 11122 | 25.0 | 18.8 | 35.6 | 20.7 | 60.6 | −0.175 | −0.048 |
M. bullatum | 11126 | 26.7 | 17.6 | 35.4 | 20.3 | 62.1 | −0.140 | −0.071 |
M. lanchesteri | 11125 | 27.7 | 16.5 | 37.5 | 18.3 | 65.2 | −0.150 | −0.052 |
M. nipponense | 11128 | 27.6 | 16.8 | 36.7 | 18.9 | 64.3 | −0.142 | −0.059 |
M. rosenbergii | 11126 | 25.9 | 18.3 | 34.2 | 21.5 | 60.1 | −0.138 | −0.080 |
tRNA | ||||||||
P. sinensis | 1438 | 34.4 | 15.2 | 30.4 | 20.0 | 64.8 | 0.062 | −0.136 |
P. serenus | 1449 | 31.3 | 17.6 | 30.5 | 20.6 | 61.8 | 0.013 | −0.079 |
P. capensis | 1438 | 35.4 | 12.9 | 34.8 | 16.9 | 70.2 | 0.009 | −0.134 |
P. gravieri | 1444 | 35.1 | 14.6 | 32.1 | 18.2 | 67.2 | 0.045 | −0.110 |
P. gravieri | 1444 | 35.2 | 14.6 | 32.0 | 18.2 | 67.2 | 0.048 | −0.110 |
E. annandalei | 1450 | 33.7 | 15.9 | 30.3 | 20.1 | 64.0 | 0.053 | −0.117 |
E. modestus | 1443 | 32.4 | 18.5 | 34.6 | 14.5 | 67.0 | −0.033 | 0.121 |
E. carinicauda | 1445 | 33.6 | 15.2 | 32.2 | 19.0 | 65.8 | 0.021 | −0.111 |
M. bullatum | 1443 | 35.6 | 14.3 | 29.8 | 20.3 | 65.4 | 0.089 | −0.173 |
M. lanchesteri | 1449 | 34.9 | 14.4 | 31.5 | 19.3 | 66.4 | 0.051 | −0.145 |
M. nipponense | 1450 | 35.0 | 14.8 | 30.7 | 19.4 | 65.7 | 0.065 | −0.135 |
M. rosenbergii | 1449 | 34.6 | 15.1 | 30.1 | 20.2 | 64.7 | 0.070 | −0.144 |
rRNA | ||||||||
P. sinensis | 2088 | 38.9 | 9.1 | 34.6 | 17.4 | 73.5 | 0.059 | −0.313 |
P. serenus | 2176 | 32.4 | 14.5 | 33.5 | 19.5 | 65.9 | −0.017 | −0.147 |
P. capensis | 2112 | 37.7 | 9.3 | 36.5 | 16.5 | 74.2 | 0.016 | −0.279 |
P. gravieri | 2092 | 38.5 | 9.6 | 34.4 | 17.5 | 72.9 | 0.056 | −0.292 |
P. gravieri | 2091 | 38.5 | 9.5 | 34.5 | 17.5 | 73.0 | 0.055 | −0.296 |
E. annandalei | 2088 | 38.2 | 10.0 | 32.7 | 19.2 | 70.9 | 0.078 | −0.315 |
E. modestus | 2128 | 34.8 | 16.9 | 38.3 | 10.0 | 73.1 | −0.048 | 0.257 |
E. carinicauda | 2142 | 38.0 | 10.6 | 33.6 | 17.7 | 71.6 | 0.061 | −0.251 |
M. bullatum | 2169 | 39.1 | 9.9 | 29.8 | 21.3 | 68.9 | 0.135 | −0.365 |
M. lanchesteri | 2154 | 39.4 | 9.7 | 31.7 | 19.3 | 71.1 | 0.108 | −0.331 |
M. nipponense | 2157 | 38.9 | 10.4 | 29.9 | 20.7 | 68.8 | 0.131 | −0.331 |
M. rosenbergii | 2157 | 38.3 | 11.1 | 27.7 | 22.9 | 66.0 | 0.161 | −0.347 |
CR | ||||||||
P. sinensis | 1159 | 46.7 | 6.5 | 38.1 | 8.7 | 84.8 | 0.101 | −0.145 |
P. serenus | 1150 | 37.5 | 12.5 | 35.5 | 14.5 | 73.0 | 0.027 | −0.074 |
P. capensis | 1085 | 42.3 | 9.4 | 38.1 | 10.2 | 80.4 | 0.052 | −0.041 |
P. gravieri | 948 | 42.1 | 8.0 | 39.7 | 10.2 | 81.8 | 0.029 | −0.121 |
P. gravieri | 947 | 42.0 | 8.1 | 39.6 | 10.2 | 81.6 | 0.029 | −0.115 |
E. annandalei | 934 | 43.0 | 7.7 | 37.2 | 12.1 | 80.2 | 0.072 | −0.222 |
E. modestus | 952 | 38.3 | 10.1 | 43.7 | 7.9 | 82.0 | −0.066 | 0.122 |
E. carinicauda | 886 | 41.0 | 9.3 | 38.7 | 11.1 | 79.7 | 0.029 | −0.088 |
M. bullatum | 1002 | 42.8 | 7.3 | 39.1 | 10.8 | 81.9 | 0.045 | −0.193 |
M. lanchesteri | 861 | 41.7 | 7.3 | 41.0 | 10.0 | 82.7 | 0.008 | −0.156 |
M. nipponense | 950 | 42.4 | 9.2 | 37.5 | 10.9 | 79.9 | 0.061 | −0.085 |
M. rosenbergii | 931 | 39.5 | 9.6 | 36.2 | 14.7 | 75.7 | 0.044 | −0.210 |
