Table 2 Top 20 up- and down-regulated proteins of significant difference in KPC-KP cells exposed to LVO.
No | Proteins | Gene name | Uniprot accession no. | General function | Cellular component | Fold change |
|---|---|---|---|---|---|---|
Upregulated proteins | ||||||
1 | NAD(P)H dehydrogenase (quinone) | wrbA | B5XXP0 | Stress response | Membrane | 5.15458 |
2 | Beta-lactamase SHV-11 | blaSHV-11 | P37323 | Stress response | Cytoplasm | 4.62696 |
3 | Ribosome-recycling factor | frr | B5Y1J9 | Protein biosynthesis | Cytoplasm | 4.54865 |
4 | Phosphopentomutase | deoB | B5Y275 | Metabolic intermediate biosynthesis | Cytoplasm | 4.05602 |
5 | Diacetyl reductase [(S)-acetoin forming] | budC | Q48436 | Acetoin metabolism | Cytoplasm | 4.01896 |
6 | Cell division protein ZapB | zapB | A6TFR0 | Cell division | Membrane | 3.66352 |
7 | Uridine phosphorylase | udp | P52671 | Nucleotide metabolism | Cytoplasm | 3.41065 |
8 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | dapD | B5Y1K5 | Cell wall biosyntheiss | Cytoplasm | 3.27497 |
9 | Elongation factor Ts | tsf | A6T4X2 | Protein biosynthesis | Cytoplasm | 3.19873 |
10 | Methionine–tRNA ligase | metG | A6TBK7 | Protein biosynthesis | Cytoplasm | 2.92754 |
11 | Carbapenem-hydrolyzing beta-lactamase KPC | bla | Q9F663 | Stress response | Cytoplasm | 2.90361 |
12 | Adenylate kinase | adk | A6T5N7 | Nucleotide metabolism | Cytoplasm | 2.87125 |
13 | DNA protection during starvation protein | dps | A6T6Q6 | DNA processing | Cytoplasm | 2.87 |
14 | Glucose-6-phosphate isomerase | pgi | A6TGT4 | Energy synthesis | Cytoplasm | 2.78288 |
15 | Xanthine phosphoribosyltransferase | gpt | A6T532 | Nucleotide metabolism | Membrane | 2.72207 |
16 | Autonomous glycyl radical cofactor | grcA | A6TCJ1 | Stress response | Cytoplasm | 2.71508 |
17 | Purine nucleoside phosphorylase DeoD-type | deoD | B5Y274 | Nucleotide metabolism | Membrane | 2.54311 |
18 | 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase | gpmA | B5XZB2 | Energy synthesis | Cytoplasm | 2.43127 |
19 | 50S ribosomal protein L7/L12 | rplL | A6TGN9 | Protein biosynthesis | Ribosomal protein | 2.32274 |
20 | 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase | fabA | A6T748 | Fatty acid biosynthesis | Cytoplasm | 2.26672 |
Downregulated proteins | ||||||
21 | NADH-quinone oxidoreductase subunit B | nuoB | A6TBX3 | Transporter protein | Membrane | −5.59153 |
22 | Outer membrane protein A | ompA | P24017 | Transporter protein | Membrane | −5.24924 |
23 | Mannitol-1-phosphate 5-dehydrogenase | mtlD | A6TFJ4 | Manitol metabolism | Cytoplasm | −4.12857 |
24 | ATP synthase subunit c | atpE | B5XZL9 | Energy synthesis | Membrane | −3.95817 |
25 | 60 kDa chaperonin | groL | A6TH53 | Stress response | Cytoplasm | −3.92018 |
26 | ATP synthase subunit b | atpF | B5XZM0 | Energy synthesis | Membrane | −3.89086 |
27 | NADH-quinone oxidoreductase subunit A | nuoA | A6TBX4 | Transporter protein | Membrane | −3.74012 |
28 | D-erythrose-4-phosphate dehydrogenase | epd | A6TDT2 | Cofactor biosynthesis | Cytoplasm | −3.51524 |
29 | Exodeoxyribonuclease 7 small subunit | xseB | B5Y0W9 | DNA processing | Cytoplasm | −3.47431 |
30 | ATP phosphoribosyltransferase | hisG | B5XPE8 | Protein biosynthesis | Cytoplasm | −3.3997 |
31 | ATP synthase gamma chain | atpG | A6TG37 | Energy synthesis | Membrane | −3.39661 |
32 | ATP synthase subunit beta | atpD | A6TG36 | Energy synthesis | Membrane | −3.32617 |
33 | DNA-directed RNA polymerase subunit beta | rpoB | A6TGP0 | DNA processing | Cytoplasm | −3.20933 |
34 | DNA-directed RNA polymerase subunit alpha | rpoA | A6TEU8 | DNA processing | Cytoplasm | −3.19363 |
35 | Chaperone protein DnaJ | dnaJ | A6T4F5 | Stress response | Cytoplasm | −3.15398 |
36 | 50S ribosomal protein L35 | rpmI | B5XQC8 | Protein biosynthesis | Ribosomal protein | −3.12775 |
37 | Leucine-responsive regulatory protein | lrp | P37424 | DNA processing | Cytoplasm | −3.05971 |
38 | Outer membrane protein C | ompC | Q48473 | Transporter protein | Membrane | −3.03548 |
39 | ATP synthase epsilon chain | atpC | A6TG35 | Energy synthesis | Membrane | −3.03454 |
40 | Lipoyl synthase | lipA | B5XZS6 | Protein biosynthesis | Cytoplasm | −3.02594 |