Table 2 Metagenomics analyses.

Code	Nucleic acid sequenced	Denoised PE reads analyzed^a	Human-like scaffolds^b	Notable findings
T1	RNA	109,426,939	98	Coxsackievirus (1 scaffold)
T2	RNA	100,344,056	43
T5	RNA	80,678,185	43
T7 _DNA	DNA	101,083,848	664
T7 _RNA	RNA	90,253,628	1058
T8	DNA	136,198,410	254	TTV (3 scaffolds)
T9	DNA	95,189,284	518
T10	DNA	58,588,892	1246
T11	RNA	105,289,212	1046
T12	RNA	117,697,380	89
T13	RNA	96,539,124	265
N3	RNA	85,965,850	67
N4	RNA	80,826,768	32	F. nucleatum (58 scaffolds)
N6	RNA	95,336,818	69	TTV (1 scaffold)

^aActual number of reads analyzed, after removing low-quality ones. ^bScaffolds are constructed by linking together a non-contiguous series of genomic sequences, consisting of sequences separated by gaps of known length; linked sequences are typically contiguous, corresponding to read overlaps.

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