Table 1 Functional annotation and location of the 220 Olfactory receptor genes found in the Cory’s Shearwater genome.

From: Signature of adaptive evolution in olfactory receptor genes in Cory’s Shearwater supports molecular basis for smell in procellariiform seabirds

Clade

Sub-family

Number of OR genes

Location

Integrity*

γ - c

14j1-like

73

Scaffold (9)/Degenerate (64)

9 intact, 4 partial

5 pseudogene, 55 truncated

γ - c

14A16 -ike

58

Scaffold (13)/Degenerate (45)

6 intact, 5 partial

5 pseudogene, 42 truncated

γ - c

14I1-like

7

Scaffold (2)/Degenerate (5)

5 partial, 2 truncated

γ - c

14C36-like

47

Scaffold (6)/Degenerate (41)

2 intact, 4 partial

3 pseudogene, 38 truncated

γ - c

14A2-like

1

Scaffold

1 truncated

γ

5v1-like

1

Scaffold

1 intact

γ

5F1-like

2

Scaffold

1 intact, 1 partial

γ

24-like

1

Degenerate

1 truncated

γ

4a16-like

2

Scaffold (1)/Degenerate (1)

2 truncated

γ

6B1-like

1

Scaffold

1 intact

γ

13c2-like

2

Degenerate

2 truncated

γ

11a1-like

1

Scaffold

1 partial

γ

10ag1-like

10

Scaffold (1)/Degenerate (9)

3 partial, 2 pseudogene

5 truncated

?

unknown

14

Degenerate

12 truncated

  1. Genes that could not be reliable assigned to an OR sub-family with the functional annotation pipeline belong to an “unknown” family. *Genes were classified as Intact if they had start and stop codons, no premature stops or frameshift mutations; Partial if they had an incomplete coding region and were not at the edge of a contig; Pseudogene if they had the full coding region but had internal stop or frameshifts, Truncated if they were located at the edge of a contig.
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