Table 6 Relative abundance (%) of microbial taxa differentially abundant according to dietary treatment in the ileal and caecal digesta of pigs^a.

From: Effect of cereal soaking and carbohydrase supplementation on growth, nutrient digestibility and intestinal microbiota in liquid-fed grow-finishing pigs

Cereal form (C_soak)^b:	Fresh	Fresh	Soak	Soak	SEM^d	P-value^e
Enzyme (ENZ)^c:	−	+	−	+	SEM^d	ENZ	C_soak	ENZ*C_soak
Ileum digesta^f
P_Tenericutes	0.36	0.51	0.04	0.08	0.278	0.67	<0.05	0.10
F_Ruminococcaceae	0.02	0.01	0.02	0.01	0.008	<0.05	0.80	0.40
F_Enterococcaceae	0.02	0.07	0.04	0.05	0.027	<0.05	0.98	0.39
F_Neisseriaceae	0.01	0.04	0.02	0.06	0.026	<0.05	0.55	0.24
F_Moraxellaceae	0.04	0.16	0.10	0.44	0.234	<0.05	0.55	0.18
F_Lachnospiraceae	0.12^b	0.15^b	0.15^b	1.01^a	0.332	<0.05	0.06	<0.05
G_Lelliottia	0.07	0.04	0.15	0.22	0.063	0.85	<0.05	0.06
G_Intestinibacter	0.57^a,b	0.10^c	0.18^c,b	0.89^a	0.308	0.78	0.72	<0.05
G_Citrobacter	0.44	0.41	1.44	1.43	0.360	0.96	<0.001	0.06
G_Lachnospiraceae_UCG-007	0.10^b	0.09^b	0.05^b	0.66^a	0.252	0.07	0.12	<0.05
G_Cellulosilyticum	0.04^b	0.08^a,b	0.03^b	0.38^a	0.130	<0.05	0.22	<0.05
G_Acinetobacter	0.02^b	0.16^a	0.10^a	0.43^a	0.172	0.21	0.32	<0.01
G_Lactococcus	0.11^c	0.18^c,b	0.76^a,b	1.72^a	0.605	0.60	<0.01	<0.01
Caecum digesta^f
F_Spirochaetaceae	0.10^b	0.65^a	0.45^a,b	1.14^a	0.512	0.12	0.42	<0.05
F_Family_XIII	0.16^b	0.31^a,b	0.39^a	0.40^a	0.075	0.56	0.15	<0.05
F_Bacteroidaceae	0.02^b	0.06^a	0.05^a,b	0.08^a	0.015	0.12	0.52	<0.05
F_Desulfovibrionaceae	0.02^b	0.06^a,b	0.07^a,b	0.13^a	0.037	0.14	0.12	<0.05
F_Rikenellaceae	1.17^b	2.12^a,b	1.87^a,b	3.03^a	0.469	0.12	0.21	<0.05
F_Enterobacteriaceae	0.17^b	1.30^a	0.15^b	0.14^b	0.525	0.12	0.09	<0.05
F_Leuconostocaceae	0.03^b	0.08^a,b	0.19^a	0.10^a,b	0.047	0.81	0.11	<0.05
G_Rikenellaceae_RC9_gut_group	1.22^b	2.30^a	1.94^a,b	3.17^a	0.479	0.09	0.40	<0.05
G_Ruminococcus_2	0.23^a	0.10^b	0.22^a	0.09^b	0.042	<0.01	1.00	<0.05
G_Lachnospiraceae_AC2044_group	0.23^c,b	0.96^a	0.19^c	0.71^a,b	0.287	<0.01	0.82	<0.05
G_Leuconostoc	0.02^b	0.05^a,b	0.13^a	0.09^a	0.027	0.76	0.17	<0.05
G_Lachnospiraceae_UCG-001	0.87^a	0.39^c	0.53^c,b	0.78^a,b	0.103	0.51	0.99	<0.05
G_Lachnoclostridium_12	0.03^b	0.02^c	0.03^a	0.01^d	0.000	0.16	0.99	<0.05

^aValues within a row that do not share a common superscript are statistically different (P < 0.05).
^bSoaking the cereal fraction of the diet prior to feeding (fresh = 0 h soaking, soak = 3 h soaking).
^cEnzyme supplementation with a xylanase and β-glucanase complex [unsupplemented (−), supplemented (+)].
^dSEM = standard error of the mean.
^eP-value corrected for false discovery rate (FDR).
^fP_ = Phylum, F_ = Family, G_ = Genus.

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Table 6 Relative abundance (%) of microbial taxa differentially abundant according to dietary treatment in the ileal and caecal digesta of pigs^a.

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