Table 2 The distribution of allele frequencies of SLA-1 among different pig breeds.

From: SLA-1 Genetic Diversity in Pigs: Extensive Analysis of Copy Number Variation, Heterozygosity, Expression, and Breed Specificity

Allele	Accession	KNP (114)^d	SNU (52)	NIH (29)	Duroc (21)	Berkshire (19)	Yorkshire (19)	Landrace (19)	ATCC (8)	Land x KNP (6)	Lanyu (5)	Ossabaw (5)	Meishan (4)	Local PAM cells (4)	AGH (2)	All (307)
01:01	AK236893	0^e	0	0	0	0	10.2	4.65	0	0	0	0	0	0	0	0.86
02:01	AY135592	0	43.27	43.14	0	0	0	0	0	0	0	0	0	0	0	16.38
02:02	EU440334	0	0	0	0	0	8.16	0	10.53	0	0	0	15.38	0	0	0.98
04:01	AK396599	0	0	13.73	73.81	1.89	4.08	4.65	21.05	0	90	0	30.77	0	25	8.31
04:02	AK398003	0	0	0	0	3.77	0	0	0	0	0	0	0	25	0	0.49
06:01	AK398228	0	6.73	0	0	0	0	0	0	0	0	0	0	0	0	1.71
07:01	EU440339	0	43.27	43.14	0	0	0	0	5.26	0	0	0	0	0	0	16.5
07:02	AY135587	0	0	0	2.38	1.89	0	2.33	5.26	0	0	0	0	12.5	0	0.61
07:03^a	KU754555	0	0	0	0	0	2.04	0	0	0	0	0	0	0	0	0.12
07:04	KU754554	0	0	0	0	0	2.04	0	0	0	0	0	0	0	0	0.12
07:05	EU440331	0	0	0	0	0	0	0	5.26	0	0	0	0	0	0	0.12
07:07^b	MF871653	0	0	0	0	0	0	0	0	0	0	0	0	0	50	0.24
07:08^b	MF871650	0	0	0	0	0	8.16	0	0	0	0	0	0	0	0	0.49
08:01	NM001246245	28.22	0	0	0	0	0	4.65	0	14.29	0	0	0	12.5	0	8.92
08:03	AF464043	0	0	0	0	0	0	4.65	0	0	0	0	0	0	0	0.24
08:04	AK396218	0	0	0	0	0	0	0	0	0	0	33.33	0	0	0	0.49
08:05	AF464015	0	0	0	0	0	0	2.33	0	0	0	0	0	0	0	0.12
08:07	KU953375	0	0	0	0	0	0	0	5.26	0	0	0	0	0	0	0.12
08:08	EU440332	0	0	0	0	0	8.16	0	5.26	0	0	0	0	0	0	0.61
08:10	AK231553	0	0	0	0	0	16.33	2.33	0	0	0	0	0	12.5	0	1.22
08:11	AK351685	0	0	0	0	0	2.04	6.98	0	0	0	0	0	0	0	0.49
08:13	AY459299	0	0	0	0	0	0	0	0	0	0	0	7.69	0	0	0.12
08:15^a	KJ555020	0	0	0	0	11.32	0	0	0	0	0	0	0	0	0	0.73
08:16^b	MF871654	0	0	0	0	0	0	0	0	0	0	25	0	0	0	0.37
08:17^b	MF871647	0	0	0	16.67	0	0	2.33	0	0	0	0	0	12.5	0	1.1
09:01	AP009556	0	0	0	0	0	0	4.65	0	7.14	0	0	0	0	0	0.37
10:02	DQ303230	0	0	0	0	0	0	0	0	0	0	0	15.38	0	0	0.24
11:01(01\|02)^c	AK396545	0	0	0	0	5.66	2.04	0	10.53	0	0	0	0	0	0	0.73
11:02	DQ992488	40.66	0	0	4.76	0	0	0	0	21.43	0	0	0	25	0	12.84
11:03	DQ883209	5.39	0	0	0	0	8.16	0	0	7.14	0	0	0	0	0	2.2
11:04	EU440338	0	0	0	0	7.55	0	4.65	5.26	0	0	25	0	0	0	1.22
12:01	KC510996	6.64	0	0	0	0	4.08	2.33	5.26	0	0	0	0	0	0	2.44
13:01	AK237395	0	0	0	0	0	4.08	2.33	5.26	0	0	0	0	0	0	0.49
13:02	AY459297	0	0	0	0	0	0	0	0	0	0	0	7.69	0	0	0.12
14:01	EU440343	0	0	0	0	1.89	0	20.93	5.26	21.43	0	0	0	0	0	1.71
14:02	EU440342	0	0	0	0	0	0	0	5.26	0	0	0	0	0	0	0.12
15:01	AK398067	1.24	0	0	0	0	0	9.3	0	7.14	0	0	0	0	0	0.98
15:02	AK346419	12.45	0	0	0	0	0	6.98	0	14.29	0	0	0	0	0	4.28
15:03^a	MF498783	0	0	0	0	9.43	0	0	0	0	0	0	7.69	0	0	0.73
16:01	MF871646	0	0	0	2.38	0	0	0	0	0	0	0	0	0	25	0.24
17:01	DQ303229	0	0	0	0	0	0	0	0	0	0	0	15.38	0	0	0.24
18:01	EU440333	0	0	0	0	0	8.16	0	5.26	0	0	0	0	0	0	0.61
18:02^a	AB845314	0	6.73	0	0	0	0	0	0	0	0	0	0	0	0	1.71
19:02^b	MF871652	0	0	0	0	0	0	0	0	0	10	0	0	0	0	0.12
20:02^b	MF871649	0	0	0	0	0	0	2.33	0	0	0	0	0	0	0	0.12
21:01^a	KU754556	5.39	0	0	0	0	6.12	0	0	7.14	0	0	0	0	0	2.08
21:02^b	MF871648	0	0	0	0	22.64	0	0	0	0	0	8.33	0	0	0	1.59
21:03^a	AK394788	0	0	0	0	0	4.08	2.33	0	0	0	0	0	0	0	0.37
23:01^a	KF026021	0	0	0	0	0	0	9.3	0	0	0	0	0	0	0	0.49
23:02^b	MF871651	0	0	0	0	22.64	0	0	0	0	0	0	0	0	0	1.47
23:03^b	MF871655	0	0	0	0	0	0	0	0	0	0	8.33	0	0	0	0.12
23:04^a	KJ555027	0	0	0	0	11.32	2.04	0	0	0	0	0	0	0	0	0.86

^aAlleles identified by other labs previously, but not reported to IPD.
^bNovel alleles identified in this study.
^cThe sequences of exons 2 and 3 are identical between the alleles 11:01:01 and 11:01:02. Six-digit allele naming is used to indicate nucleotide difference at exon 4.
^dThe number of animals for each breed.
^eAllele frequencies.

Back to article page

Table 2 The distribution of allele frequencies of SLA-1 among different pig breeds.

Search

Quick links