Table 2 Genes located within the top 5% CIWIs shared by three Central Italian white cattle breeds, based on BovineHD SNPChip data. See Supplementary Table S1 for the full list, and Table 1 for breed labels.

Chr	Position	Gene ID	Associated function	Top 1%*
Chr	Position	Gene ID	Associated function	CHI	MCG	ROM
1	68.01–68.10	PDIA5				x
1	68.26–68.42	ADCY5				x
1	68.46–68.55	HACD2				x
1	68.90–68.94	CCDC14	Beef traits			x
1	68.95–68.99	ROPN1	Beef traits			x
1	139.68–139.84	CPNE4	Growth traits		x
5	11.31–11.31	TMA7
7	48.39–48.47	H2AFY	Muscle regeneration	x		x
7	48.62–48.62	NEUROG1		x		x
7	48.66–48.67	CXCL14	Body weight	x		x
13	46.78–46.83	LARP4B				x
13	47.04–47.18	DIP2C				x
13	47.20–47.26	ZMYND11				x
13	47.40–47.42	PRNP				x
13	47.44–47.45	PRND				x
15	42.97–43.48	SBF2	Growth traits		x	x
15	43.51–43.59	SWAP70			x	x
18	10.88–10.94	USP10	Gluconeogenesis	x
18	10.99–11.05	CRISPLD2	Residual feed intake	x
18	11.12–11.13	ZDHHC7	Residual feed intake	x
18	11.17–11.19	KIAA0513	Residual feed intake	x
18	11.20–11.21	FAM92B	Residual feed intake	x
24	62.51–62.53	SERPINB7				x
24	62.59–62.61	SERPINB2				x
24	62.62–62.64	SERPINB10	Feed efficiency			x

Chr, chromosome; Position, physical coordinates in Mb. *While all genes listed in the table are in the top 5%, top 1% indicates which genes were recorded at an even higher stringency threshold (1%) applied on the genome-wide CIWI results.

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