Table 3 Point mutations in the colistin chromosomal resistance genes of the Klebsiella pneumoniae isolates from South Africa.

From: Pathogenomics and Evolutionary Epidemiology of Multi-Drug Resistant Clinical Klebsiella pneumoniae Isolated from Pretoria, South Africa

Isolate ID

MIC

pmrB

pmrA

phoP

phoQ

kpnE

kpnF

mgrB

ccrB

K118

>4

A246T, L339C, H340I, N341T, R342D, Q343S, P346Q

K112Q

Gene not found

K141

>4

Gene not found

K145

4

M66I

L7*

K146

4

K021

4

S405R, H406Y

K031

4

H406Y

K053

4

A246T

S64T

K054

4

A246T

S64T

K059

4

A246T

S64T

K085

4

A217V

I39F, Del RRKIYGF (40–46)

K090

4

I88M, K107R

Y66T

C12Y, A35V, Y36H, G191E, N388D, S379P, W404R

K038

≤2

C12Y, G191E, S379P, 404R, F213L, T248I, Q258R

K080

≤2

K077

≤2

K117

≤2

K086

≤2

K061

≤2

K089

≤2

  1. *Reference K. pneumoniae genome used was K. pneumoniae ATCC 13883 (PRJNA244567).