Table 5 Results for ws-CNN using case-insensitive (denoted CI) and case-sensitive (denoted as CS) word embeddings. The standard errors of the error measures are shown below the averaged values. The results are obtained from 10-fold CV.
From: Combining deep learning with token selection for patient phenotyping from electronic health records
Phenotype | Precision % | Recall % | ROCAUC % | F1 % | ||||
|---|---|---|---|---|---|---|---|---|
CI | CS | CI | CS | CI | CS | CI | CS | |
Adv. Cancer | 81.29 | 75.53 | 71.32 | 76.69 | 86.62 | 86.96 | 75.14 | 75.37 |
±2.96 | ±3.62 | ±3.29 | ±3.08 | ±1.54 | ±1.56 | ±1.78 | ±2.10 | |
Adv. Heart Disease | 72.68 | 77.67 | 74.24 | 72.83 | 84.28 | 84.00 | 73.04 | 74.36 |
±2.59 | ±3.23 | ±3.23 | ±2.86 | ±1.43 | ±1.17 | ±1.81 | ±1.44 | |
Adv. Lung Disease | 63.93 | 63.41 | 71.21 | 56.83 | 83.25 | 76.51 | 66.99 | 59.34 |
±1.65 | ±3.46 | ±3.30 | ±4.51 | ±1.57 | ±2.25 | ±1.91 | ±3.57 | |
Chronic Neuro | 70.91 | 71.72 | 66.62 | 67.46 | 79.21 | 79.62 | 68.41 | 68.91 |
±2.20 | ±2.22 | ±2.99 | ±3.25 | ±1.56 | ±1.45 | ±2.23 | ±1.88 | |
Chronic Pain | 67.19 | 67.11 | 60.13 | 58.22 | 76.30 | 74.96 | 63.02 | 61.78 |
±3.43 | ±4.21 | ±2.43 | ±1.97 | ±0.80 | ±0.53 | ±1.07 | ±1.25 | |
Alcohol Abuse | 81.84 | 87.40 | 79.55 | 88.46 | 86.11 | 86.95 | 80.06 | 80.59 |
±3.27 | ±3.40 | ±3.69 | ±3.15 | ±1.81 | ±1.59 | ±2.54 | ±2.49 | |
Substance Abuse | 62.12 | 64.71 | 76.75 | 74.16 | 84.94 | 84.81 | 68.00 | 68.68 |
±4.62 | ±4.05 | ±3.73 | ±3.61 | ±2.05 | ±1.92 | ±3.61 | ±3.39 | |
Obesity | 86.06 | 88.63 | 84.16 | 81.02 | 91.44 | 90.04 | 84.31 | 84.13 |
±3.86 | ±3.78 | ±3.62 | ±3.69 | ±1.77 | ±1.87 | ±2.40 | ±2.85 | |
Psychiatric Disorders | 79.38 | 83.96 | 85.02 | 89.96 | 89.19 | 90.00 | 81.86 | 83.72 |
±2.32 | ±2.37 | ±2.47 | ±1.79 | ±1.28 | ±1.08 | ±1.93 | ±1.90 | |
Depression | 91.18 | 92.04 | 82.73 | 79.56 | 89.34 | 88.26 | 86.11 | 84.94 |
±2.18 | ±1.97 | ±1.93 | ±2.38 | ±0.77 | ±0.90 | ±1.04 | ±1.09 | |
