Figure 1 | Scientific Reports

Figure 1

From: Performance comparison of next generation sequencing analysis pipelines for HIV-1 drug resistance testing

Figure 1The alternative text for this image may have been generated using AI.

Comparison of NGS HIVDR data analysis pipelines workflow. Abbreviations: NIAID, National Institute of Allergy and Infectious Diseases; VQA, Virology Quality Assurance; BC-CfE, British Columbia Center for Excellence in HIV/AIDS; NHRL, National HIV and Retrovirology Laboratories; BU, Brown University; CWRU, Case Western Reserve University; CIENI, Center for Research in Infectious Diseases; IrisCaxia, AIDS Research Institute. *There are only 57 instead of 60 FASTQ files because 1 lab only processed 7 samples instead of 10. ** Each sample’s pipeline result (AAVF/csv) from each lab was compared, and subsequently all analyses were combined.

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