Table 3 Results from STRs and SNPs for 6 hybrids with known genealogy and 15 putative hybrids (phenotypically deviating from parental types).

From: Matching STR and SNP genotyping to discriminate between wild boar, domestic pigs and their recent hybrids for forensic purposes

  

qDP

MC1R_1

MC1R_2

MC1R_3

MC1R genotypes

NR6A1 genotypes

Hy_1

F1

0.571

A

G

G

ED2/ED2 ED2/EP1/2/3

TT

Hy_2

F1

0.592

G/A

G/A

G

e/ED2 e/EP1/2/3

TT

Hy_3

F1

0.766

G/A

G/A

G

e/ED2 e/EP1/2/3

TT

Hy_4

F1 × DP

0.830

G/A

G

G

E+/ED2 E+/EP1/2/3

T/C

Hy_5

F1 × WB

0.175

G/A

G

G

E+/ED2 E+/EP1/2/3

TT

Hy_6

F1

0.299

G/A

G

G

E+/ED2 E+/EP1/2/3

T/C

Phe_1

DP

0.030

A

G

G

ED2/ED2 ED2/EP1/2/3

CC

Phe_2

DP

0.540

G/A

G

G

E+/ED2 E+/EP1/2/3

TT

Phe_3

WB

0.491

G/A

G

G

E+/ED2 E+/EP1/2/3

TT

Phe_4

WB

0.074

G/A

G

G

E+/ED2 E+/EP1/2/3

TT

Phe_5

WB

0.213

G

G

G

E+/E+

CC

Phe_6

DP

0.745

A

G

G

ED2/ED2 EP1/2/3/EP1/2/3 ED2/EP1/2/3

T/C

Phe_7

DP

0.392

G

G

G

E+/E+

CC

Phe_8

DP

0.386

G

G

G

E+/E+

CC

Phe_9

WB

0.039

G/A

G

G

E+/ED2 E+/EP1/2/3

T/C

Phe_10

WB

0.120

G

G/A

G

E+/e

T/C

Phe_11

WB

0.046

G

G

G

E+/E+

CC

Phe_12

WB

0.408

G

G

G

E+/E+

CC

Phe_13

DP

0.315

G/A

G

G

E+/ED2 E+/EP1/2/3

T/C

Phe_14

WB

0.772

G

G

G

E+/E+

T/C

Phe_15

DP

0.888

G/A

G/A

G

e/ED2 e/EP1/2/3

T/C

  1. DP(WB) = domestic pig (wild boar) putative source population of hybrids; F1 = first generation hybrid; qDP = proportion of membership in the domestic pig cluster obtained by STRUCTURE. Wild-type alleles at MC1R and NR6A1 are in bold.