Table 2 The haplotype distribution of the mtND2 gene for six samples (by clone sequencing)a.

From: The spatio-temporal features of chicken mitochondrial ND2 gene heteroplasmy and the effects of nutrition factors on this gene

Haplotype

55555555555555555555555555566

55566666777777777888889999900

56815678023556699123364678800

92636345376384916432596382626

Number

Sample one

Sample two

Sample three

Sample four

Sample five

Sample six

Wild type

AATTTATTATCGTACTTTATTTTATATAG

       

H1

----------------------------------------------------

17

    

8

9

H2

--------------TG------------------------G--------

14

1

9

4

   

H3

--------------TG----------C---G-------G--------

1

1

     

H4

--------C----TG------------------------G---------

1

1

     

H5

--------------TG----C------------------G---------

1

1

     

H6

---------C---TG------------C----------G---------

1

1

     

H7

--------------TG------G----------------G---------

1

1

     

H8

------C------TG------------------------G---------

1

1

     

H9

--------------TG------------------------GC--------

1

 

1

    

H10

------------CTG------------------------G---------

1

  

1

   

H11

----C--------TG------------------------G---------

1

  

1

   

H12

--------------TG------------------------G------G-

1

  

1

   

H13

---------CC-TG-------T--------------- G---------

1

  

1

   

H14

--G----------TG------------------------G---------

1

  

1

   

H15

G------------TGT---------------------- G---------

1

  

1

   

H16

------------------------------------C--------------

7

   

7

  

H17

-------------------------------------C-C-----------

1

   

1

  

H18

-------------------------------------C--------A----

1

   

1

  

H19

--------------------T----------C--------------------

1

    

1

 

H20

---------------------------------------------------A

1

    

1

 

H21

-----------------------------------C---------G------

1

     

1

Total

  

7

2

7

3

3

2

  1. aStandard reference sources of mtND2 gene sequence: GenBank (AP003317), no involving the whole genome sequence.