Table 3 Phylogenetic analysis of 80 E. coli isolates (Positive for ESBL genes) Causing urinary tract infection derived from various hospitals in Egypt.
Phylogenetic groups | Genes Combination Profile | Number of isolates | (%) of isolates |
|---|---|---|---|
A | (arpA+, chuA-, yjaA-, TspE4.C2-) | 0 | 0% |
B1 | (arpA+, chuA-, yjaA-, TspE4.C2+) | 0 | 0% |
F | (arpA-, chuA+, yjaA-, TspE4.C2-) | 17 | 21.25% |
B2 | (arpA-, chuA+, yjaA+, TspE4.C2-) | 10 | B2 = 42 (52.5%) |
B2 | (arpA-, chuA+, yjaA+,TspE4.C2+) | 32 | |
B2 | (arpA-, chuA+, yjaA-,TspE4.C2+) | 0 | |
A or C | (arpA+, chuA-, yjaA+,TspE4.C2-) | 0 | 0 |
D or E | (arpA+, chuA+, yjaA-,TspE4.C2-) | 0 | 0 |
D or E | (arpA+, chuA+, yjaA-,TspE4.C2+) | 0 | 0 |
E or clade I | (arpA+, chuA+, yjaA+, TspE4.C2-) | 0 | 0 |
Clade I or II | (arpA-, chuA-, yjaA+, TspE4.C2-) | 10 | 12.5% |
Clade III, IV or V | (arpA-, chuA+(476)C, yjaA-, TspE4.C2-) | 0 | 0 |
Unknown | (arpA-, chuA-, yjaA-,TspE4.C2+) | 4 | Unknown = 11 (13.75%) |
Unknown | (arpA-, chuA-, yjaA+,TspE4.C2+) | 3 | |
Unknown | (arpA+, chuA-, yjaA+, TspE4.C2+) | 0 | |
Unknown | (arpA+, chuA+, yjaA+, TspE4.C2+) | 0 | |
Unknown | (arpA-, chuA-, yjaA-, TspE4.C2-) | 4 |
