Table 2 Characterization of protein domains present in Yps granuloma proteins, interacting proteins and metabolic pathways as discerned using UniProtKB, STRING and KEGG, respectively.

From: Comparative in-silico proteomic analysis discerns potential granuloma proteins of Yersinia pseudotuberculosis

S. No.

UniProt ID

Protein Name

Domain

STRING Annotation

KEGG pathway

Position(s)

Description

Definition

Protein

E-value

 

1.

A0A0U1QT64

Uncharacterized protein

9–134

AAA - ATPases associated with a variety of cellular activities

—

—

—

—

2.

A0A0U1QTE0

Uncharacterized protein

64–307

Formylglycine-generating sulfatase enzyme

—

—

—

—

3.

A0A0U1QWK3

ABC transporter, ATP-binding protein

8–239, 332–561

ABC transporter

ABC transporter family protein

yadG

2.8e-33

—

4.

A0A0U1R1R0

5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase (EC 1.2.1.60)

16–474

Aldedh- Aldehyde dehydrogenase family

5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase

hpaE

5.7e-288

Tyrosine metabolism

Microbial metabolism in diverse environments

Degradation of aromatic compounds

5.

A0A0U1R1Z2

Uncharacterized protein

30–295

Cellulase - glycoside hydrolase family 5

glycosyl hydrolase 10 family protein

DJ40_3168

6.6e-225

—

6.

A0A0U1R2S7

Transcriptional regulator, TetR family

14–74

tetR- DNA-binding, helix-turn-helix (HTH) domain

bacterial regulatory s, tetR family protein

yxaF

6.6e-115

—

7.

A7FMD4

4-hydroxy-3-methylbut-2-enyl diphosphate reductase

—

—

4-hydroxy-3-methylbut-2-enyl diphosphate reductase

ispH

5.2e-179

Terpenoid backbone biosynthesis

Metabolic pathways

Biosynthesis of

secondary metabolites

Biosynthesis of antibiotics