Table 1 Number of OTUs per groups and estimate of sequence diversity and richness.

From: 16S rRNA gene sequencing reveals an altered composition of the gut microbiota in chickens infected with a nephropathogenic infectious bronchitis virus

Sample

Reads

OTUs

Shannon

Simpson

Chao1

ACE

Goods Coverage

INC1

69,809

457

3.258

0.638

541.726

536.081

0.998

INC2

67,468

487

4.014

0.786

523.181

537.556

0.998

INC3

63,114

485

3.654

0.824

567.179

585.597

0.997

INC4

59,820

475

3.879

0.787

533.897

536.607

0.998

INC5

69,855

567

4.332

0.833

757.815

718.399

0.996

INC6

61,207

550

4.276

0.861

602.009

620.741

0.998

IIBV1

45,655

430

3.706

0.802

466.849

464.887

0.999

IIBV2

52,163

413

4.083

0.846

452.276

455.064

0.998

IIBV3

55,708

496

5.178

0.933

549.915

557.015

0.998

IIBV4

49,563

392

3.301

0.772

458.944

465.737

0.998

IIBV5

51,018

282

2.717

0.648

296.138

305.69

0.999

IIBV6

53,475

349

3.38

0.742

371.021

373.35

0.999

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