Table 2 The expression pattern of 22 DEGs validated through qRT-PCR and KEGG pathway analysis results in test hybrid, ā denotes down-regulation and ā denotes up-regulation.
S. No | Gene name | Description | Microarray | qRT-PCR | KEGG pathway analysis | ||
|---|---|---|---|---|---|---|---|
Leaf | Panicle | Leaf | Panicle | ||||
1 | Os02t0559800-01 | E3 ubiquitin ligase EL5 | ā | ā | ā | ā | ā |
2 | Os02t0624300-01 | Similar to Y19 protein | ā | ā | ā | ā | ā |
3 | Os08t0482600-01 | Cupredoxin domain containing protein. | Ā | ā | Ā | ā | Ā |
4 | Os08t0473900-03 | Similar to Alpha-amylase isozyme 3D | Ā | ā | Ā | ā | Starch degradation |
5 | Os08t0473900-01 | Alpha-amylase isozyme 3D precursor | Ā | ā | Ā | ā | Starch degradation |
6 | Os08t0466200-01 | Similar to KUP-related potassium transporter. | Ā | ā | Ā | ā | Ā |
7 | Os02t0569900-01 | Cytochrome P450 family protein-1500bp | ā | Ā | ā | Ā | Ā |
8 | Os02t0626400-01 | Phenylalanine ammonia-lyase | ā | Ā | ā | Ā | Suberin biosynthesis, phenyl propanoid bio synthesis and initial reactions, salycilate biosynthesis |
9 | Os03t0753100-01 | MADS-box transcription factor, Inflorescence and spikelet development | ā | Ā | ā | Ā | Ā |
10 | Os10t0531400-01 | Glutathione S-transferase GST 30 | ā | Ā | ā | Ā | Glutathion mediated detoxification |
11 | Os03t0401300-01 | Sucrose synthase 2 | ā | Ā | ā | Ā | Sucrose degradation to ethanol and lactate (anaerobic), galactose degradation II, starch and sucrose metabolism, sucrose degradation III, sucrose biosynthesis |
12 | Os01t0348900-01 | SalT gene product (Salt-induced protein). | Ā | ā | Ā | ā | Ā |
13 | Os01t0314800-01 | Late embryogenesis abundant protein 3 family protein | Ā | ā | Ā | ā | Ā |
14 | Os03t0815100-01 | Similar to OsNAC6 protein | Ā | ā | Ā | ā | Ā |
15 | Os04t0180400-01 | Similar to Cytochrome P450 99A2 | ā | ā | ā | ā | Momilactone biosynthesis, nicotine degradation II, nicotine degradation III, bupropion degradation, acetone degradation to methyl glyoxal |
16 | Os09t0334500-01 | WRKY transcription factor 74. | Ā | ā | Ā | ā | Ā |
17 | Os12t0559200-01 | Lipoxygenase | ā | Ā | ā | Ā | Biosynthesis of plant harmones, JA biosynthesis, alpha-lenolenic acid metabolism, 13-LOX and 13 HPL pathway, divinyl ether biosynthesis II, lenoleic acid metabolism |
18 | Os08t0498100-01 | Similar to Caffeoyl-CoA O-methyltransferase 2 | ā | Ā | ā | Ā | Phenyl propanoid biosynthesis, suberin biosynthesis |
19 | Os02t0626100-01 | Similar to Phenylalanine ammonia-lyase. | ā | Ā | ā | Ā | Phenyl propanoid biosynthesis, suberin biosynthesis, phenyl alanine metabolism, phenyl propanoid biosynthesis initial reactions, salicylate biosynthesis, Tropane, piperidine and pyridine alkaloid biosynthesis, nitrogen metabolism |
20 | Os08t0448000-01 | Similar to 4-coumarate-CoA ligase 1 | Ā | ā | Ā | ā | Biosynthesis of phenyl propanoids, Biosynthesis of alkaloids derived from shikimate pathway, phenyl propanoid biosynthesis, metheonine biosynthesis II, Ubiquinone and other terpenoid-quinone biosynthesis, threonine biosynthesis from homoserine |
21 | Os10t0465700-01 | Similar to Beta-amylase PCT-BMYI | ā | ā | ā | ā | starch degradation |
22 | Os02t0738200-01 | Zinc finger, RING/FYVE/PHD-type domain containing protein. | ā | Ā | ā | Ā | Ā |
