Table 2 Prediction table.

From: Correlation-based network analysis combined with machine learning techniques highlight the role of the GABA shunt in Brachypodium sylvaticum freezing tolerance

 

Metabolic pathways

Predictionvalue

Sensitivity analysis

Ain1 + Osl1

gamma-glutamyl cycle

0.74, 0.96

0.71, 0.92

glutathione degradation

0.74, 0.96

0.71, 0.92

glycine biosynthesis

0.74, 0.74

0.78, 0.81

L-asparagine biosynthesis II

0.74, 0.85

0.82, 0.87

suberin monomers biosynthesis

0.74, 0.85

0.78, 0.85

Ain1

4-aminobutanoate degradation I

0.96

0.94

4-aminobutanoate degradation IV

0.96

0.94

4-hydroxybenzoate biosynthesis I (eukaryotes)

0.74

0.85

4-hydroxybenzoate biosynthesis IV

0.59

0.53

4-hydroxybenzoate biosynthesis V

0.59

0.53

fatty acid biosynthesis (plant mitochondria)

0.59

0.56

free phenylpropanoid acid biosynthesis

0.59

0.50

homocarnosine biosynthesis

0.96

0.94

L-glutamate degradation IV

0.96

0.93

nitric oxide biosynthesis II (mammals)

0.93

0.92

photorespiration

0.74

0.78

putrescine degradation IV

0.74

0.78

reductive TCA cycle I

0.74

0.81

trehalose degradation II (trehalase)

0.93

0.90

UMP biosynthesis II

0.74

0.82

Osl1

(S)-reticuline biosynthesis I

0.96

0.90

2′-deoxymugineic acid phytosiderophore biosynthesis

0.73

0.74

3-cyano-L-alanine + H +  + 2 H2O - > ammonium + L-aspartate

0.73

0.76

4-hydroxyphenylpyruvate biosynthesis

0.96

0.90

ajugose biosynthesis II (galactinol-independent)

0.88

0.80

cyanide detoxification I

0.96

0.91

gamma-glutamyl cycle (plant pathway)

0.73

0.70

hypoglycin biosynthesis

0.73

0.82

L-asparagine biosynthesis I

0.73

0.80

L-asparagine degradation I

0.73

0.76

L-glutamine + L-aspartate + ATP + H2O - > L-glutamate + L-asparagine + AMP + diphosphate + H+

0.73

0.80

L-phenylalanine biosynthesis III (cytosolic, plants)

0.85

0.84

L-tyrosine biosynthesis II

0.96

0.90

L-tyrosine biosynthesis III

0.96

0.90

rosmarinic acid biosynthesis I

0.96

0.90

rosmarinic acid biosynthesis II

0.96

0.90

S-methyl-5-thio-alpha-D-ribose 1-phosphate degradation

0.73

0.79

stachyose biosynthesis

0.73

0.71

superpathway of phospholipid biosynthesis II (plants)

0.96

0.87

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