Table 2 Number of success cases with different neighborhood distance cutoffs.

From: Neighborhood Preference of Amino Acids in Protein Structures and its Applications in Protein Structure Assessment

Cutoff

I-TASSER (a)

3DRobot

I-TASSER (b)

ROSETTA

Modeller

4 Å

9/56

40/200

5/56

7/58

9/20

5 Å

44/56

126/200

18/56

25/58

12/20

6 Å

48/56

149/200

22/56

34/58

13/20

7 Å

49/56

140/200

20/56

25/58

14/20

8 Å

49/56

119/200

19/56

18/58

13/20

9 Å

49/56

104/200

20/56

14/58

11/20

10 Å

49/56

89/200

20/56

9/58

11/20

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