Figure 10
From: Delineating elastic properties of kinesin linker and their sensitivity to point mutations

ΔG expressed as a function of the fractional extension for the neck linker, Ala-only peptide, no-Asparagine chain (Asn substituted), no-Lysine chain (Lys substituted) and no-Proline chain (Pro substituted). Fractional extension is defined as a ratio of the extension measured from the relaxed mean end-to-end distance to the rest of the path (L minus the relaxed mean end-to-end distance, where L is the contour length of the chain in question). The contour length per amino acid has been assumed to be equal to 4.0 Å65. Several different ΔG values have been acquired by repeating the in silico experiments while using different values of a constant stretching force equal to 130, 400, 700, 1000 and 1300 kJ*mol−1*nm−1. Parabolic curves have been fitted to the plots. Quadratic coefficients of fitted plots are: Lys substituted: 44.3 * 103kBT; neck linker: 10.1 * 103kBT; Asn substituted: 9.2 * 103kBT; Pro substituted: 7.9 * 103kBT; Ala-only: 5.4 * 103kBT. They represent the effective stiffness of the stretched structure. The intercept coefficients are: −37.3, −95.8, −86.6, −134.4 and −63.1 kBT, respectively.