Table 1 GO Biological Processes that are enriched in DEGs in ALPPS, PVL and PH.

From: RNA-Seq transcriptome profiling in three liver regeneration models in rats: comparative analysis of partial hepatectomy, ALLPS, and PVL

GO Biological Process Term

24 hours

96 hours

ALPPS

PVL

PH

ALPPS

PVL

PH

FE*

p-value

FE*

p-value

FE*

p-value

FE*

p-value

FE*

p-value

FE*

p-value

DNA metabolic process

4.7

7.0E-21

5.8

8.8E-24

3.3

3.8E-17

1.6

3.3E-02

—

—

—

—

cell cycle

3.0

6.3E-19

3.8

1.7E-23

2.5

1.3E-18

1.9

2.4E-05

—

—

—

—

DNA replication

6.9

2.0E-18

9.2

1.7E-22

4.5

1.4E-14

2.6

2.0E-03

—

—

—

—

chromosome segregation

7.3

1.5E-13

8.9

2.5E-14

5.4

1.6E-13

3.4

5.8E-04

—

—

2.7

2.4E-02

DNA repair

5.0

2.1E-11

6.2

1.1E-12

3.3

1.8E-08

–

–

—

—

—

—

mitosis

3.4

1.3E-10

4.4

4.6E-13

2.8

5.6E-11

2.1

9.3E-04

—

—

—

—

catabolic process

2.2

2.1E-07

2.3

1.4E-06

1.7

1.5E-05

1.8

2.5E-04

—

—

—

—

cellular process

1.2

9.6E-07

1.2

4.1E-06

1.1

6.6E-03

1.2

1.7E-04

—

—

1.3

2.1E-07

ion transport

2.2

3.5E-04

—

—

1.6

5.0E-03

2.4

5.0E-05

—

—

—

—

cytokinesis

2.9

2.7E-03

3.2

4.5E-03

2.0

1.9E-02

2.4

2.2E-02

—

—

—

—

metabolic process

1.2

6.1E-06

1.3

1.7E-06

1.2

6.3E-07

–

–

—

—

—

—

cellular component movement

2.6

3.4E-06

2.5

6.1E-05

1.9

8.0E-05

2.1

6.3E-04

—

—

2.7

2.9E-05

lipid metabolic process

1.6

1.6E-02

—

—

2.6

2.8E-13

2.1

3.2E-05

—

—

2.3

1.1E-04

response to stress

1.6

2.2E-03

1.7

1.1E-03

1.4

6.1E-03

—

—

—

—

1.5

1.9E-02

anion transport

2.3

1.7E-03

—

—

1.7

1.4E-02

2.9

2.6E-05

—

—

—

—

cellular component morphogenesis

2.0

1.3E-04

1.7

1.1E-02

—

—

2.3

8.7E-06

3.1

8.7E-05

2.3

2.6E-04

macrophage activation

—

—

—

—

—

—

3.7

8.1E-05

3.5

3.0E-02

3.4

3.0E-03

system development

—

—

—

—

—

—

1.6

9.5E-04

1.8

1.5E-02

1.7

2.4E-03

immune system process

—

—

—

—

—

—

1.4

1.2E-02

—

—

2.2

2.3E-08

developmental process

—

—

—

—

—

—

1.3

1.5E-02

—

—

1.7

6.1E-05

cell proliferation

—

—

—

—

—

—

2.2

2.6E-02

—

—

6.1

6.1E-09

signal transduction

—

—

—

—

—

—

–

–

—

—

1.7

5.5E-07

cell communication

—

—

—

—

—

—

–

–

—

—

1.6

1.7E-06

cell adhesion

—

—

—

—

—

—

2

6.5E-04

—

—

2.6

1.2E-05

  1. Abbreviations: DEG, differentially expressed gene; FE, Fold Enrichment is the number of DEGs involved in each GO biological process term divided by the expected number. – Denotes non-significant term.
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