Table 3 Amino acid variations among 20 OsPLDα1 variants.

From: Novel allelic variation in the Phospholipase D alpha1 gene (OsPLDα1) of wild Oryza species implies to its low expression in rice bran

Proteina

Ref.c

I

II

III

IV

V

VI

VII

VIII

IX

X

XI

XII

Variantb

1, 4, 8

2

3

5, 6, 7

9

10

11

12

13

14

15, 16, 17

18

19, 20

76

I

I

I

I

I

I

I

I

I

I

V

V

V

77

N

N

N

N

N

N

N

N

N

N

D

N

N

128

R

R

R

R

R

R

R

R

T

T

T

T

T

139

P

P

P

P

P

P

P

P

P

P

P

L

P

159

N

N

N

N

N

N

N

N

K

N

N

N

N

165

R

R

H

R

R

R

R

R

R

R

R

R

R

239

E

E

E

K

E

E

E

E

E

E

E

E

E

243

V

V

V

V

V

V

V

V

I

V

V

V

V

299

E

E

E

E

E

E

E

E

A

A

A

A

A

306

D

D

D

D

N

D

D

D

D

D

D

D

D

320

G

G

G

G

G

G

G

G

S

G

G

G

G

345

L

L

L

L

L

L

L

L

L

L

F

L

L

346

P

P

P

P

P

P

P

P

P

P

A

P

P

347

N

N

N

N

N

N

N

N

N

N

K

N

N

348

Q

Q

Q

Q

Q

Q

Q

Q

Q

Q

P

Q

Q

350

S

S

S

S

S

S

S

S

S

S

L

S

S

351

Q

Q

Q

Q

Q

Q

Q

Q

Q

Q

P

Q

Q

352

Q

Q

Q

Q

Q

Q

Q

Q

Q

Q

T

Q

Q

353

R

R

R

R

R

R

R

R

R

R

K

R

R

372

Q

Q

Q

Q

Q

Q

Q

Q

Q

Q

E

Q

Q

373

Y

Y

Y

Y

Y

Y

Y

Y

Y

Y

D

Y

Y

374

H

H

H

H

H

H

H

H

H

H

S

H

H

375

S

S

S

S

S

S

S

S

S

S

Q

S

S

377

F

F

F

F

F

F

F

F

F

F

R

F

F

378

R

R

R

R

R

R

R

R

R

R

W

R

R

395

T

T

T

T

T

N

N

N

N

N

N

N

N

399

K

N

K

K

K

K

K

K

T

K

T

T

T

481

P

P

P

P

P

P

P

P

L

P

P

P

P

634

A

A

A

A

A

A

G

A

G

G

G

A

A

728

M

M

M

M

M

M

M

T

M

T

T

T

T

  1. Amino acids (indicated with the letter code) and their positions (indicated in numbers) in the OsPLDα1 variants. Amino acids with highlighted background show substitutions in OsPLDα1 protein variants in comparison to the OsPLDα1 protein (AB571657.1).
  2. aGroups of OsPLDα1 variants based on amino acid sequences.
  3. bGroups of OsPLDα1 variants based on nucleotide sequences.
  4. cRef indicate the nucleotide sequences variants which translates into the amino acid sequence same as that of the reference OsPLDα1 protein sequence of Nipponbare.