Table 1 Differentially expressed genes (FDR corrected P < 0.05, fold change ≥ 2) encoding rumen epithelial transporters in the comparisons of the middle and early, late and middle, and late and early stages in Japanese Black beef cattle.

From: Long-term high-grain diet alters ruminal pH, fermentation, and epithelial transcriptomes, leading to restored mitochondrial oxidative phosphorylation in Japanese Black cattle

Gene Symbol

Fold Change

P-value

Gene Name

Middle vs. Early

Late vs. Middle

Late vs. Early

Middle vs. Early

Late vs. Middle

Late vs. Early

SLC5A12

2.24

−2.54

 

1.84.E-03

1.18.E-04

 

solute carrier family 5 (sodium/glucose cotransporter), member 12

SLC6A8

−2.01

  

1.28.E-03

  

solute carrier family 6 (neurotransmitter transporter, creatine), member 8

SLC7A6OS

 

−2.05

  

3.23.E-03

 

solute carrier family 7, member 6 opposite strand

SLC9A6

−4.08

4.08

 

7.87.E-04

1.64.E-05

 

solute carrier family 9 (sodium/hydrogen exchanger), member 6

SLC10A5

2.72

  

2.05.E-04

  

solute carrier family 10, member 5

SLC22A5

 

−3.68

  

1.89.E-08

 

solute carrier family 22 (organic cation/carnitine transporter), member 5

SLC22A8

−3.50

6.75

 

2.73.E-03

5.26.E-07

 

solute carrier family 22 (organic anion transporter), member 8

SLC22A18

−2.49

2.20

 

2.05.E-04

8.00.E-06

 

solute carrier family 22, member 18

SLC23A3

 

−2.32

  

1.46.E-04

 

solute carrier family 23 (nucleobase transporters), member 3

SLC25A5

−3.30

2.99

 

4.76.E-04

2.17.E-04

 

solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5

SLC25A6

−5.59

4.80

 

5.10.E-04

5.40.E-05

 

solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6

SLC25A11

−2.48

2.38

 

6.02.E-04

3.30.E-05

 

solute carrier family 25 (mitochondrial carrier; oxoglutarate carrier), member 11

SLC25A17

 

2.10

  

1.19.E-04

 

solute carrier family 25 (mitochondrial carrier; peroxisomal membrane protein, 34 kDa), member 17

SLC26A3

−6.38

10.80

 

3.45.E-03

6.37.E-05

 

solute carrier family 26, member 3

SLC28A3

−6.71

10.20

 

1.35.E-03

9.92.E-06

 

solute carrier family 28 (sodium-coupled nucleoside transporter), member 3

SLC29A4

 

2.45

2.32

 

7.62.E-07

1.60.E-03

solute carrier family 29 (nucleoside transporters), member 4

SLC35A5

−2.73

2.52

 

8.02.E-03

3.88.E-03

 

solute carrier family 35, member A5

SLC35C1

 

−2.09

  

2.44.E-06

 

solute carrier family 35, member C1

SLC35F5

−2.63

3.83

 

6.84.E-04

5.55.E-06

 

solute carrier family 35, member F5

SLC39A7

 

−2.46

  

2.03.E-08

 

solute carrier family 39 (zinc transporter), member 7

SLC39A11

 

−2.17

−2.92

 

7.98.E-06

9.93.E-05

solute carrier family 39 (metal ion transporter), member 11

SLCO2A1

  

−2.08

  

4.90.E-04

solute carrier organic anion transporter family, member 2A1