Table 3 Positive predictive values from naïve Bayes analysis.
From: Differentiation of Hispanic biogeographic ancestry with 80 ancestry informative markers
Known Origin | SNP Panel | 5 sets of 500 micro-simulations | 347 real 1000 G genotypes | ||||
|---|---|---|---|---|---|---|---|
Sen. (%) | Spe. (%) | PPV (%) | Sen. (%) | Spe. (%) | PPV (%) | ||
CLM | Setser80 | 81.9% | 70.1% | 47.8% | 17.0% | 98.4% | 80.0% |
Seldin96 | 84.2% | 77.9% | 55.9% | 55.3% | 90.9% | 69.3% | |
Kidd44 | 63.2% | 49.9% | 29.6% | 51.1% | 83.8% | 53.9% | |
PUR | Setser80 | 90.4% | 86.9% | 69.8% | 81.7% | 85.2% | 70.2% |
Seldin96 | 89.8% | 80.5% | 60.6% | 89.4% | 86.8% | 74.4% | |
Kidd44 | 75.8% | 51.7% | 34.4% | 71.2% | 85.2% | 67.3% | |
PEL | Setser80 | 98.1% | 97.1% | 91.8% | 62.4% | 97.7% | 89.8% |
Seldin96 | 99.4% | 98.9% | 96.9% | 87.1% | 95.4% | 86.0% | |
Kidd44 | 91.8% | 90.4% | 76.1% | 75.3% | 94.7% | 82.1% | |
MXL | Setser80 | 89.8% | 79.5% | 59.3% | 84.4% | 67.1% | 36.7% |
Seldin96 | 96.3% | 92.0% | 80.1% | 51.6% | 90.1% | 54.1% | |
Kidd44 | 85.3% | 68.3% | 47.3% | 50.0% | 86.6% | 45.7% | |
