Table 1 Assembly of Mekong tiger perch genome.
stLFR | stLFR + nanopore | |||
|---|---|---|---|---|
contig | scaffold | contig | scaffold | |
Number | 10,550 | 4,442 | 5,009 | 4,442 |
Length (bp) | 582,060,642 | 594,964,832 | 593,074,541 | 595,051,252 |
Maximum length (bp) | 1,134,184 | 39,306,008 | 13,208,434 | 39,224,198 |
Average length (bp) | 55,172 | 133,941 | 118,402 | 133,960 |
N50 | 995 | 18 | 86 | 18 |
NL50 | 171,232 | 9,730,178 | 2,175,996 | 9,689,676 |
N90 | 3,706 | 71 | 302 | 72 |
NL90 | 37,538 | 1,407,639 | 447,174 | 1,380,814 |
N rate (%) | 0.00 | 2.17 | 0.00 | 0.33 |
GC content (%) | 42.74 | 42.74 | 42.77 | 42.77 |