Table 4 Annotation information of the 17 hub CpG loci.
From: Identification of prognostic signature of non–small cell lung cancer based on TCGA methylation data
CpG | Chrom | Start | End | GeneSymbol | Feature_Type | MM | GS | Module |
|---|---|---|---|---|---|---|---|---|
cg02606808 | chr5 | 72107675 | 72107676 | MAP1B | Island | 0.947354 | 0.24915 | black |
cg19940437 | chr14 | 89954878 | 89954879 | EFCAB11 | S_Shore | 0.934014 | 0.275199 | tan |
cg18901116 | chr10 | 71397101 | 71397102 | CDH23 | Island | 0.939698 | 0.259864 | tan |
cg19940437 | chr14 | 89954878 | 89954879 | TDP1 | S_Shore | 0.934014 | 0.275199 | tan |
cg00919016 | chr7 | 1.39E + 08 | 1.39E + 08 | KLRG2 | Island | 0.930312 | 0.289498 | black |
cg25191850 | chr1 | 2.34E + 08 | 2.34E + 08 | KCNK1 | Island | 0.900188 | 0.49867 | turquoise |
cg14831838 | chr2 | 2.19E + 08 | 2.19E + 08 | CDK5R2 | Island | 0.909691 | 0.264816 | black |
cg26682866 | chr2 | 2.19E + 08 | 2.19E + 08 | CDK5R2 | Island | 0.935384 | 0.262505 | black |
cg19584875 | chr14 | 90061869 | 90061870 | KCNK13 | Island | 0.942315 | 0.279599 | tan |
cg21231789 | chr14 | 90061855 | 90061856 | KCNK13 | Island | 0.932377 | 0.254928 | tan |
cg16581536 | chr14 | 37595644 | 37595645 | TTC6 | Island | 0.916525 | 0.46462 | turquoise |
cg16581536 | chr14 | 37595644 | 37595645 | FOXA1 | Island | 0.916525 | 0.46462 | turquoise |
cg06706183 | chr6 | 53545058 | 53545059 | GCLC | Island | 0.923999 | 0.204057 | black |
cg26752263 | chr6 | 53545055 | 53545056 | GCLC | Island | 0.930967 | 0.217814 | black |
cg19940437 | chr14 | 89954878 | 89954879 | RP11-33N16.3 | S_Shore | 0.934014 | 0.275199 | tan |
cg23466060 | chr4 | 13544858 | 13544859 | NKX3-2 | Island | 0.908867 | 0.326585 | black |
cg06061966 | chr11 | 46345093 | 46345094 | DGKZ | N_Shore | 0.905048 | 0.551368 | green |
cg01244124 | chr15 | 70763776 | 70763777 | UACA | Island | 0.925507 | 0.263363 | black |
cg09272849 | chr15 | 70763496 | 70763497 | UACA | Island | 0.917523 | 0.35689 | black |
cg07436991 | chr20 | 11890663 | 11890664 | BTBD3 | N_Shore | 0.911026 | 0.45042 | turquoise |
