Table 3 Average and standard error r2 of adjacent SNPs at various distance classes in the autosomal genome of Angus subpopulations.

From: Uncovering Sub-Structure and Genomic Profiles in Across-Countries Subpopulations of Angus Cattle

Markersa

Subpopulations

Brazilian

Canadian

Adjb.

100Kbc

300Kbc

500Kbc

Adjb.

100Kbc

300Kbc

500Kbc

MAF > 0%

0.196 ± 0.001

0.218 ± 0.001

0.126 ± 0.002

0.101 ± 0.007

0.219 ± 0.001

0.243 ± 0.002

0.148 ± 0.002

0.120 ± 0.007

MAF > 1%

0.203 ± 0.001

0.227 ± 0.001

0.131 ± 0.002

0.105 ± 0.006

0.243 ± 0.001

0.244 ± 0.001

0.149 ± 0.003

0.121 ± 0.008

MAF > 5%

0.220 ± 0.002

0.251 ± 0.002

0.145 ± 0.002

0.122 ± 0.006

0.239 ± 0.002

0.269 ± 0.002

0.163 ± 0.002

0.141 ± 0.007

  1. aWith no criterion of MAF (MAF > 0%), MAF of 0.01 and MAF of 0.05 the exact number of SNPs were 31,483, 30,657 and 28,048, respectively.
  2. bAverage r² pairwise analyses considering 31,454, 30,628 and 28,019 combinations of adjacent SNPs, independent of the distance between SNPs.
  3. cAverage r² for adjacent SNPs spaced up to 100 Kb, 300 Kb and 500 Kb. The exact number of pairwise of SNPs in this classes were 24,124, 6,708 and 502 with MAF > 0%; 23,144, 6,816 and 539 with MAF > 1%; 20,211, 6,969 and 672 with MAF > 5%.
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