Table 6 Submergence tolerant rice cultivars showing consistent performance in five different trials across three locations, along with population Structure (1. Deep-water, 2. Indica, 3. Aus, 4. Aromatic-Japonica), AEX marker amplification and Sub1 SNP haplotypes. Bold and normal fonts indicate Sub1A-1 dependent and Sub1A-1 independent tolerance, respectively.
Sr. no. | Cultivar | Struct-ure group | No. of trials with tolerance | AEX ampli-fication | SNP haplotype | ||
|---|---|---|---|---|---|---|---|
Sub1A | Sub1B | Sub1C | |||||
1. | Madal | 2 | 5 | − | − | H6 | H29 |
2. | Maha Dikwee | 2 | 5 | − | H5 | H6 | H2 |
3. | S-138 | 2 | 5 | − | H2 | H6 | H61 |
4. | Singhara | 2 | 5 | − | H1 | H6 | H43 |
5. | ARC 614 | 1 | 4 | − | H2 | H6 | H31 |
6. | Dholmon 43-3 | 1 | 4 | − | H2 | H6 | H61 |
7. | Goda Heenati | 2 | 4 | − | − | H6 | − |
8. | Heen Sulai | 2 | 4 | − | H8 | H9 | H1 |
9. | Houra Kani | 1 | 4 | − | − | H6 | H45 |
10. | Kariyawa | 2 | 4 | − | H1 | H6 | H29 |
11. | Kaluwee | 2 | 4 | − | H2 | H6 | H60 |
12. | Naldak | 2 | 4 | − | H8 | H9 | H1 |
13. | Nirboi | 1 | 4 | − | − | H6 | H61 |
14. | Tetep | 2 | 4 | − | H3 | H6 | H41 |
15. | Ausboro | 3 | 3 | + | H8 | H9 | H1 |
16. | Birpala | 1 | 3 | − | H3 | H6 | H26 |
17. | CR 1009 | 2 | 3 | − | H2 | H6 | H17 |
18. | IR 64 | 2 | 3 | − | H2 | H6 | H29 |
19. | Jaldungi | 1 | 3 | − | H2 | H6 | H45 |
20. | Kajrahawa | 3 | 3 | − | H2 | H9 | H43 |
21. | Karkati 87 | 2 | 3 | − | H8 | H6 | H52 |
22. | Karnal Local | 4 | 3 | + | H8 | H8 | H11 |
23. | Kasalath | 3 | 3 | + | H8 | H9 | H1 |
24. | Menyar Hunei | 1 | 3 | − | H8 | H6 | H15 |
25. | Naalumoli Karuppam | 2 | 3 | − | − | − | H3 |
26. | Paiaim | 2 | 3 | −− | − | − | H37 |
27. | Pakri Buna | 1 | 3 | − | H8 | H8 | H24 |
28. | Panidubi | 1 | 3 | + | H8 | H9 | H56 |
29. | Pankei | 1 | 3 | + | H8 | H9 | H1 |
30. | Pataim | 1 | 3 | − | H5 | H6 | H41 |
31. | Rajbhog | 2 | 3 | − | − | H6 | H42 |
32. | Sang Khla | 1 | 3 | − | − | − | H37 |
