Table 2 Summary of common candidate loci between hyperspectral results and chalk trait in the mini-core diversity panel.

1

28,782,853

4.86 × 10⁻⁷

0.24

LOC_Os01g50060

1-aminocyclopropane-1-carboxylate deaminase

1

31,494,903

1.99 × 10⁻⁸

0.26

LOC_Os01g54560 ^{¤ ‡}

Trehalose synthase

3

3,823,250

1.20 × 10⁻⁷

0.25

LOC_Os03g07480 ^{¤ ‡}

Sucrose transporter (SUT1)

3

22,433,619

1.84 × 10⁻⁸

0.27

LOC_Os03g40270 ^{¤ ‡}

Alpha-1,4-glucan-protein synthase

3

28,376,883

4.58 × 10⁻⁷

0.27

LOC_Os03g49800

Phosphatidylinositol-4-phosphate 5-kinase (PIPK)

4

21,277,848

7.00 × 10⁻⁷

0.18

LOC_Os04g35030

Cellulose synthase-like protein (CSLH3)

4

22,079,754

4.81 × 10⁻⁷

0.24

LOC_Os04g36610 ^¤

Endoglucanase

5

3,349,202

3.16 × 10⁻⁷

0.29

LOC_Os05g06480

Inorganic H + pyrophosphatase (chalk5)

6

4,719,289

9.52 × 10⁻⁸

0.26

LOC_Os06g09450 ^¤

Sucrose synthase (SUS2)

8

15,723,764

6.76 × 10⁻⁸

0.26

LOC_Os08g25734

Glucose-1-phosphate adenylyltransferase (AGPS2)

10

4,312,440

2.16 × 10⁻⁷

0.28

LOC_Os10g08022 ^{¤ ‡}

Fructose-bisphosphate aldolase isozyme